View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11563_high_9 (Length: 251)
Name: NF11563_high_9
Description: NF11563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11563_high_9 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 89 - 251
Target Start/End: Original strand, 2873817 - 2873977
Alignment:
| Q |
89 |
aactacgttatgctatatatttctatagcatttgatgtaataatatatattcatctcaatgaattttgatatactaggcaacttcaactgaaggccaaga |
188 |
Q |
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| T |
2873817 |
aactacattatgctatatatttctatagcatttgatgtaataatatatattcatctcaatgaattttgatatactaggcaacttcaactgaaggccaaga |
2873916 |
T |
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| Q |
189 |
ggaaagtctgataacagactatatgctgaaggtaaataatactattataaagttctcttatac |
251 |
Q |
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| T |
2873917 |
ggaaagtctgataaccgattatatgctgaaggt-aataatactatt-taaagttctcttatac |
2873977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 2873761 - 2873824
Alignment:
| Q |
7 |
agaagcagagatcataccagacccagatattgatgtctacatgaaggtgagaaagaaactacat |
70 |
Q |
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| T |
2873761 |
agaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaaagaaactacat |
2873824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 2883538 - 2883574
Alignment:
| Q |
23 |
ccagacccagatattgatgtctacatgaaggtgagaa |
59 |
Q |
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| T |
2883538 |
ccagacccagatgttgatgtcttcatgaaggtgagaa |
2883574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 44214051 - 44214023
Alignment:
| Q |
26 |
gacccagatattgatgtctacatgaaggt |
54 |
Q |
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| T |
44214051 |
gacccagatattgatgtctacatgaaggt |
44214023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 44226216 - 44226188
Alignment:
| Q |
26 |
gacccagatattgatgtctacatgaaggt |
54 |
Q |
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| T |
44226216 |
gacccagatattgatgtctacatgaaggt |
44226188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 44237030 - 44237002
Alignment:
| Q |
26 |
gacccagatattgatgtctacatgaaggt |
54 |
Q |
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| T |
44237030 |
gacccagatattgatgtctacatgaaggt |
44237002 |
T |
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