View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11563_low_13 (Length: 239)

Name: NF11563_low_13
Description: NF11563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11563_low_13
NF11563_low_13
[»] chr4 (4 HSPs)
chr4 (1-229)||(2874128-2874356)
chr4 (1-215)||(2900614-2900828)
chr4 (1-215)||(2884136-2884350)
chr4 (94-140)||(51046642-51046688)
[»] chr2 (3 HSPs)
chr2 (1-215)||(44213311-44213525)
chr2 (1-229)||(44225472-44225700)
chr2 (1-229)||(44236286-44236513)
[»] chr7 (8 HSPs)
chr7 (13-177)||(39567540-39567704)
chr7 (69-177)||(39360711-39360819)
chr7 (88-170)||(39334909-39334991)
chr7 (88-170)||(39346167-39346249)
chr7 (88-170)||(39550822-39550904)
chr7 (88-170)||(39541564-39541646)
chr7 (94-166)||(42135748-42135820)
chr7 (85-143)||(39577419-39577477)
[»] chr8 (1 HSPs)
chr8 (86-146)||(4497929-4497989)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 2874356 - 2874128
Alignment:
Q  1 tcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874356 tcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaa 2874257  T
Q  101 aagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874256 aagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtcc 2874157  T
Q  201 accggagataccacggtgcatttcatctc 229  Q
    |||||||||||||||||||||||||||||    
T  2874156 accggagataccacggtgcatttcatctc 2874128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 2900614 - 2900828
Alignment:
Q  1 tcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaa 100  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |    
T  2900614 tcaaaaagttcataagtctctggtgctggttgaagcaaagagataactgcagttccattaagaatatgaacatattgcctaagagatttcacaatttgga 2900713  T
Q  101 aagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtcc 200  Q
    ||| ||||||||| || |||||||| ||||||||||||||||||| | | || | ||||||||||||||||||||||||||||| || ||||||||||||    
T  2900714 aagttgtggaactgtccaagccagtagatatttcatccatgaataaagcatttgctggtccaaccaacatttctcctgtggtaactcgctttctttgtcc 2900813  T
Q  201 accggagataccacg 215  Q
     ||||||||||||||    
T  2900814 tccggagataccacg 2900828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 2884350 - 2884136
Alignment:
Q  1 tcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaa 100  Q
    |||||||||||||||||||| |||||||| || || || ||||||| ||  ||||||| |||||| | ||||||||||  ||||||| |||||||||| |    
T  2884350 tcaaaaagttcataagtctcaggtgctggttggagtaaagagataactgtggttccattaagaatgtgaacatattgctgaagagatctcacaatttgga 2884251  T
Q  101 aagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtcc 200  Q
    ||| ||||||||| || || ||||| |||||||||||||||||||   | || | ||| || |||||||| ||||||||||||| || ||||||||| ||    
T  2884250 aagttgtggaactgtccaaaccagtagatatttcatccatgaataatgcatttgctggcccgaccaacatctctcctgtggtaactcgctttctttgacc 2884151  T
Q  201 accggagataccacg 215  Q
     ||||| ||||||||    
T  2884150 tccggaaataccacg 2884136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 51046688 - 51046642
Alignment:
Q  94 atttgaaaagctgtggaactatctaagccagttgatatttcatccat 140  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||    
T  51046688 atttgaaaagtagtggaactgtctaagccagttgatatttcatccat 51046642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 44213311 - 44213525
Alignment:
Q  1 tcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaa 100  Q
    |||||||| ||||||||||| ||||||||||| |||| ||| |||| |||||| ||||  | ||| | |||||||||||| |||||  ||||||||||||    
T  44213311 tcaaaaagatcataagtctcaggtgctggctggagcagtgatataactgcagtgccattcataatgtgaacatattgcctcagagagctcacaatttgaa 44213410  T
Q  101 aagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtcc 200  Q
    ||| ||||||||| || |  ||||| || |||||||||||||| |   | || | ||||||||||||||| |||||||||||||  | ||| ||||||||    
T  44213411 aagttgtggaactgtccagtccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctctcctgtggtaacacgcttcctttgtcc 44213510  T
Q  201 accggagataccacg 215  Q
     ||||||||||||||    
T  44213511 tccggagataccacg 44213525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 44225472 - 44225700
Alignment:
Q  1 tcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaa 100  Q
    |||||||| ||||||||||| |||||||| || |||| ||| |||| |||||| ||||  | ||| | ||||||||| || |||||  ||||||| ||||    
T  44225472 tcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaatctgaa 44225571  T
Q  101 aagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtcc 200  Q
    |||  |||||||| || |  ||||| || |||||||||||||| |   | || | ||||||||||||||| |||||||| || |  | ||| || |||||    
T  44225572 aagtagtggaactgtccagcccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctctcctgtagttacacgcttcctctgtcc 44225671  T
Q  201 accggagataccacggtgcatttcatctc 229  Q
     || |||||||||||   |||||||||||    
T  44225672 tccagagataccacgtaacatttcatctc 44225700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 44236286 - 44236513
Alignment:
Q  1 tcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaa 100  Q
    |||||||| ||||||||||| |||||||| || |||| ||| |||| |||||| ||||  | ||| | ||||||||| || |||||  ||||||| ||||    
T  44236286 tcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaatctgaa 44236385  T
Q  101 aagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtcc 200  Q
    ||| ||||||||| || |  ||||| || | |||||||||||| |   | || | ||||||||||||||| |||||||| || |  | ||| || |||||    
T  44236386 aagttgtggaactgtccagcccagtaga-aattcatccatgaacaatgcattggctggtccaaccaacatctctcctgtagttacacgcttcctctgtcc 44236484  T
Q  201 accggagataccacggtgcatttcatctc 229  Q
     || |||||||||||   |||||||||||    
T  44236485 tccagagataccacgtaacatttcatctc 44236513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 39567540 - 39567704
Alignment:
Q  13 taagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaac 112  Q
    ||||||||||||| |||||| || | ||||||||  || |||||||  ||||| |  |||| |||||| |  || |||||||||||||||| ||| || |    
T  39567540 taagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcctcattgaattcacaatttgaaaagttgttgagc 39567639  T
Q  113 tatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcct 177  Q
    |||| || ||||| |||||||| |||||||||||| |||| |  |||||||||||||||||||||    
T  39567640 tatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaacatttctcct 39567704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 39360819 - 39360711
Alignment:
Q  69 aacatattgcctaagagatttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaac 168  Q
    |||||||||||| |  || |||||||||||||||| ||| || ||||| || ||||| ||||||||||||||||||| | |||| |  ||||||||||||    
T  39360819 aacatattgcctcattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagtcggtccaaccaac 39360720  T
Q  169 atttctcct 177  Q
    || ||||||    
T  39360719 atctctcct 39360711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 39334991 - 39334909
Alignment:
Q  88 ttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat 170  Q
    |||||||||||||||| ||| || ||||| || ||||| ||||||||||||||||||| | |||| | |||||||||||||||    
T  39334991 ttcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaacat 39334909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 39346249 - 39346167
Alignment:
Q  88 ttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat 170  Q
    |||||||||||||||| ||| || ||||| || ||||| ||||||||||||||||||| | |||| | |||||||||||||||    
T  39346249 ttcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaacat 39346167  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 39550822 - 39550904
Alignment:
Q  88 ttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat 170  Q
    |||||||| ||||||| ||| || ||||| || ||||| ||||||||||||||||||||| ||||||  ||||||||||||||    
T  39550822 ttcacaatctgaaaagttgtcgagctatccaaaccagtagatatttcatccatgaatagagctttcgccggtccaaccaacat 39550904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 39541564 - 39541646
Alignment:
Q  88 ttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat 170  Q
    |||||||||||||||| ||| || ||||| || ||||| ||||||||||||||||||||| |||| |  |||||||| |||||    
T  39541564 ttcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaatagagctttagtcggtccaactaacat 39541646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 42135748 - 42135820
Alignment:
Q  94 atttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaacca 166  Q
    ||||||||||  || ||||||||||| || |||||||||||||||||||| || ||||| | |||||| ||||    
T  42135748 atttgaaaagtggttgaactatctaatcctgttgatatttcatccatgaacagtacttttgctggtcctacca 42135820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 39577419 - 39577477
Alignment:
Q  85 gatttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaa 143  Q
    |||||||||| |||||||| ||| || ||||| || ||||| |||||||||||||||||    
T  39577419 gatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 39577477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 4497989 - 4497929
Alignment:
Q  86 atttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatag 146  Q
    |||||||||||||||| | ||| |||||||| |  ||||||||||||||||||||||||||    
T  4497989 atttcacaatttgaaatgttgttgaactatcaagaccagttgatatttcatccatgaatag 4497929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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