View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11563_low_14 (Length: 238)
Name: NF11563_low_14
Description: NF11563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11563_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26782451 - 26782230
Alignment:
| Q |
1 |
ttggtgtaaaagaatatatgaacggttattctttaaggttctctaaacatacataaaagcaattaaagtttctttgatcattaaagtttttcggttttcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| || || ||||||||||||||| |
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| T |
26782451 |
ttggtgtaaaagaatatatgaacggttattctttaaggttctccaaacatacataaa-gaaattaaagtttctttgctcgtttttgtttttcggttttcg |
26782353 |
T |
|
| Q |
101 |
cagtgtgctcttctgttttgaaaagctattgtttatctattgttgtatggactttgatatagtccttgcaactatcaaactactattttatcaaacttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26782352 |
tagtgtgctcttctgttttgaaaagctattgtttatctattgttgcatggactttgatatagtccttgcaactatcaaactactattttatcgaacttac |
26782253 |
T |
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| Q |
201 |
acgcattcgtgtattatgattct |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
26782252 |
acgcattcgtgtattatgattct |
26782230 |
T |
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