View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11563_low_2 (Length: 589)
Name: NF11563_low_2
Description: NF11563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11563_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 23 - 574
Target Start/End: Original strand, 22621146 - 22621697
Alignment:
| Q |
23 |
ttgagaagggtcgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22621146 |
ttgagaagggtcgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatatcgtatgattgtgacactgtgacccatacacga |
22621245 |
T |
|
| Q |
123 |
tattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgct |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22621246 |
tattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagttcgct |
22621345 |
T |
|
| Q |
223 |
cttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtc |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22621346 |
cttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcagattcatcaatatataaagcagccattcgagggtc |
22621445 |
T |
|
| Q |
323 |
atgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatccca |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621446 |
atgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatccca |
22621545 |
T |
|
| Q |
423 |
tgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatattatggagtaaagccatacacc |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621546 |
tgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatattatggagtaaagccatacacc |
22621645 |
T |
|
| Q |
523 |
caagattacgaggatgttgtctcacatggatcatataatcatcaatgatgtc |
574 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621646 |
caagattacgaggctgttgtctcacatggatcatataatcatcaatgatgtc |
22621697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 510
Target Start/End: Original strand, 22657310 - 22657785
Alignment:
| Q |
35 |
gtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgt |
134 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| ||||| |||| | ||||||||||| |||||||||||||||| ||| |||||| |||| |||||| |
|
|
| T |
22657310 |
gtctcctttttgtttgtaaagctccttcaacatgcgtctcaacaacacttctatattgtaagattgtgacactgtgatccaaacacgacattcaaagtgt |
22657409 |
T |
|
| Q |
135 |
cccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctcttctcttccat |
234 |
Q |
| |
|
|| | |||||||||||||| ||||| ||||| |||||||| | ||||||||| ||||||||||| || ||||| ||||||||||||||| |||||| | |
|
|
| T |
22657410 |
ccaacaacctctttgctgtcaaaaacttttttagcaagagtagtttttccttgccctcccattcccacgacagatatgacagtgcgctctgatcttccct |
22657509 |
T |
|
| Q |
235 |
ccaccaac-aatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtcatgccatttcg |
333 |
Q |
| |
|
|||||| |||| | | ||||| ||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
22657510 |
ttaccaaccaatctact-aatctttttttgggtgcttgaaagcctataatttccgcttcatcaatgtataaagcagccattcgagggtcatgccatttgg |
22657608 |
T |
|
| Q |
334 |
ccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatga |
433 |
Q |
| |
|
| ||||||||||||||||| | |||||||||| | |||||||||||||||||| ||||| |||||||||||||| ||||||||| ||| |||| |
|
|
| T |
22657609 |
cagtttggcttcctctaaagcttgtagatccttgttgagaagaaggttggatttggaaaccatatctttcacttctttctttgatcccacaaacaaatga |
22657708 |
T |
|
| Q |
434 |
cttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatattatggagta |
510 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||| |||||||||||| |||||| ||||| |||||||| |
|
|
| T |
22657709 |
cttaatctcttgaatcttgaacgctatttgacggcgagaattcatagttttgagcaagtgaggaatatcatggagta |
22657785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 36 - 571
Target Start/End: Original strand, 22648403 - 22648938
Alignment:
| Q |
36 |
tctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtc |
135 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||||| |||||||||||| ||| ||| ||||||||| ||||| ||| |||||||||| |||| ||||||| |
|
|
| T |
22648403 |
tctcctttttgtttgtaaagctcattcaacatgcctctcagcaacccttctgtatagtatgattgcaacactttgatccatacacgaaattcaaagtgtc |
22648502 |
T |
|
| Q |
136 |
ccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctcttctcttccatc |
235 |
Q |
| |
|
|| |||||||||||||| || || ||| |||||||||||| ||||||| | |||||||| ||||||||||||||||||||||||||| |||||| || |
|
|
| T |
22648503 |
ccgctacctctttgctgtcaaacacttttctggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctctgatcttccctc |
22648602 |
T |
|
| Q |
236 |
caccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtcatgccatttcgcc |
335 |
Q |
| |
|
|||||| | ||||||| | ||| | ||| |||||| |||||| ||||| |||| |||| |||||||||||| ||||||||||||||||||| | |
|
|
| T |
22648603 |
taccaaccaaccaatcatttgttttcttggtgcttgaaggcctaccatttctgcttcaccaatgtataaagcagccgttcgagggtcatgccatttaaca |
22648702 |
T |
|
| Q |
336 |
ttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatgact |
435 |
Q |
| |
|
||||||||| ||| ||| |||||| |||||||| ||||||| ||||||||| |||| || | ||| |||||||||| ||| | | | || ||| |
|
|
| T |
22648703 |
ttttggctttttctgaagcttcttgattcttgttcattagaaggcaagatttggaactcatatctgtggcttttttccttgattccacgaataaataact |
22648802 |
T |
|
| Q |
436 |
taatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatattatggagtaaagccatacacccaagattacgagg |
535 |
Q |
| |
|
||||| ||||||||| ||| || ||| |||||||| |||| ||||||| ||||| | ||| |||||||||||||| | ||| || |||| |||||| |
|
|
| T |
22648803 |
taatgtcttgaatctcggatgcaatttgatggcgatctttcattgttttgagtaagtaagcaatcttatggagtaaagctagacatccgagatcacgagg |
22648902 |
T |
|
| Q |
536 |
atgttgtctcacatggatcatataatcatcaatgat |
571 |
Q |
| |
|
|| ||| || || ||||||||||||||||||||| |
|
|
| T |
22648903 |
ctgctgttccatatagatcatataatcatcaatgat |
22648938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 102 - 571
Target Start/End: Complemental strand, 22104878 - 22104415
Alignment:
| Q |
102 |
gacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattccta |
201 |
Q |
| |
|
|||||||||| ||| ||| || | || |||||||| || || || |||||||| ||||| | ||||| ||||| | ||||||||| ||||||||||||| |
|
|
| T |
22104878 |
gacactgtgatccaaacatgacaatcaaagtgtccaattacatccttgctgtcaaaaactctcttggctagagttgtttttccttgccctcccattccta |
22104779 |
T |
|
| Q |
202 |
ccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattcatcaatata |
301 |
Q |
| |
|
|||| || | |||||||||||||| |||| | |||| | | |||||||||| ||| | ||| ||| || || |||| ||| ||| ||||| || |
|
|
| T |
22104778 |
ccaccgaaactacagtgcgctcttccgttccctttaccatccaatcaatcaatctttttcttggtgctttgaatcccacaacatcagcttcctcaatgta |
22104679 |
T |
|
| Q |
302 |
taaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaagccatacctt |
401 |
Q |
| |
|
| |||||| | ||||||||| |||||||| || ||| || || |||| | ||||||||||||||||| ||||||||||| ||||||| | | |
|
|
| T |
22104678 |
aagagcagcaactcgagggtcgtgccatttggcatttcggttttctcttgaactgcttgatccttgttcaaaagaaggttgga------agccatatcgt |
22104585 |
T |
|
| Q |
402 |
tcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatat |
501 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||| ||||||| ||| | |
|
|
| T |
22104584 |
tcacttctttccttgatcccacgaacagatgacttaacatcttgaatctcagctgctattcgatggcgaggggtcatagttttgagtaagtgagcaatct |
22104485 |
T |
|
| Q |
502 |
tatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgat |
571 |
Q |
| |
|
||| |||| ||| | ||| ||| ||| |||||| || |||| |||||||||||||| ||||||||||| |
|
|
| T |
22104484 |
tatcaagtatagctacacatccaggatcacgaggctgctgtcctacatggatcatatactcatcaatgat |
22104415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 93 - 486
Target Start/End: Complemental strand, 22034681 - 22034294
Alignment:
| Q |
93 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
192 |
Q |
| |
|
|||||||| |||||||| | |||||||||||| || ||||||||||||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22034681 |
tatgattgagacactgtaatccatacacgataatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22034582 |
T |
|
| Q |
193 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
292 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| | |||| | | |||||||||| | | | ||| ||| ||| || |||| ||| ||| |
|
|
| T |
22034581 |
ccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaatcaatctttgtcttggtgcttcaaatcccacaacctcagtttc |
22034482 |
T |
|
| Q |
293 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
392 |
Q |
| |
|
|||| || | |||||| | ||||||||| |||||||| || || ||||||||| | | ||||| ||||||||||| |||| | ||||||| |
|
|
| T |
22034481 |
ctcaacgtaaagagcagcgactcgagggtcgtgccatttggcattcctacttcctctagaattgcttgttccttgttcaaaagaacg------ttggaag |
22034388 |
T |
|
| Q |
393 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttga |
486 |
Q |
| |
|
||||| |||||||||||||| |||||||| | ||||||| ||||| |||| |||| || ||||||||| | ||||||||||||||||||| |
|
|
| T |
22034387 |
ccatatctttcacttctttctgtgatcccacgaacagatgtcttaacatcttgtatctcagatgctattcgacgacgagggatcatagttttga |
22034294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 93 - 571
Target Start/End: Complemental strand, 22179581 - 22179109
Alignment:
| Q |
93 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
192 |
Q |
| |
|
|||||||| |||||||| | |||||||||| | || |||||||| |||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22179581 |
tatgattgagacactgtaatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22179482 |
T |
|
| Q |
193 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
292 |
Q |
| |
|
||||||| ||||| | | ||||||||||||| ||||| | |||| | | |||||||||| ||| | || ||| ||| || |||| ||| ||| |
|
|
| T |
22179481 |
ccattcccaccacgaataccacagtgcgctctttccttccctgtaccatccaatcaatcaatctttttcttggcgcttcaaatcccacaacctcagcttc |
22179382 |
T |
|
| Q |
293 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
392 |
Q |
| |
|
|| | || | ||||||| |||||||||| |||||||| | || |||||||||| | | ||||| |||||||||| |||| |||||| || |
|
|
| T |
22179381 |
ctcgacgtaaagagcagcctttcgagggtcgtgccatttggtattcctgcttcctctagaattgcttgtgccttgttcaaaagaacgttgga------ag |
22179288 |
T |
|
| Q |
393 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagt |
492 |
Q |
| |
|
||||| | ||||||||||||||||||| | | ||||||||||||||| ||||||||| | ||||||||||||||| || |||| ||||||| ||||| |
|
|
| T |
22179287 |
ccatatttatcacttctttccttgatcctacgaacagatgacttaatgtcttgaatctcagctgctattcgatggcgacgggtcatggttttgagtaagt |
22179188 |
T |
|
| Q |
493 |
gactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgat |
571 |
Q |
| |
|
|| |||| |||| | || ||| | ||| ||| ||| |||||| ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
22179187 |
gagtaatcttatcaaatacagctacacatccaggatcacgaggttgttgtccaacatggatcaaataatcatcaatgat |
22179109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 93 - 486
Target Start/End: Complemental strand, 22115249 - 22114862
Alignment:
| Q |
93 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
192 |
Q |
| |
|
|||||||| |||||||||| |||||||||| | || |||||||| |||| || |||||||| ||||| || || | ||||||| ||||||||| |||| |
|
|
| T |
22115249 |
tatgattgagacactgtgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttctttgatagagtggtttttccttgccctc |
22115150 |
T |
|
| Q |
193 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
292 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| | |||| | | |||||||||| | | | ||| ||| ||| || |||| ||| ||| |
|
|
| T |
22115149 |
ccattcctaccacagaaagaacagtgcgctcttcccttccctataccatccaatcaatcaatctttgtcttggtgcttcaaatcccacaacctcagcttc |
22115050 |
T |
|
| Q |
293 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
392 |
Q |
| |
|
|||| || | |||||||| ||||||||| |||||||| || || ||||||||| | | ||||| ||||||||||| |||| | ||||||| |
|
|
| T |
22115049 |
ctcaacgtaaagagcagccactcgagggtcgtgccatttggcattcctacttcctctagaattgcttgttccttgttcaaaagaacg------ttggaag |
22114956 |
T |
|
| Q |
393 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttga |
486 |
Q |
| |
|
||||| |||||||||||||| |||||||| | ||||||| ||||| |||| |||| || ||||||||| | ||||||||||||||||||| |
|
|
| T |
22114955 |
ccatatctttcacttctttctgtgatcccacgaacagatgtcttaaaatcttgtatctcagatgctattcgacgacgagggatcatagttttga |
22114862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 93 - 486
Target Start/End: Complemental strand, 21945788 - 21945401
Alignment:
| Q |
93 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
192 |
Q |
| |
|
|||||||| ||||| |||| ||||||| || | || ||||||| ||||| || |||||||| ||||| || ||||| ||||||| ||||||||| |||| |
|
|
| T |
21945788 |
tatgattgagacacagtgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaactttcttggctagagtggtttttccttgccctc |
21945689 |
T |
|
| Q |
193 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
292 |
Q |
| |
|
||||||||||||| || | ||||||||||| || ||||| | |||| | | ||||||| | | || ||| || || || |||| |||| ||| |
|
|
| T |
21945688 |
ccattcctaccacggaaactacagtgcgctcctcccttccctttaccatccaatcaatcaacatgtccttttgtttttcgaaacccacaacttcagcttc |
21945589 |
T |
|
| Q |
293 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
392 |
Q |
| |
|
||||| || | ||||||| |||||||| |||||||| || || |||||||| ||| || ||||||||||||||||| |||| | ||| ||| |
|
|
| T |
21945588 |
gtcaatgtaaagagcagcctgccgagggtcgtgccatttggcattctggcttcccctagagctgcttgatccttgttcaaaagaacg------ttgaaag |
21945495 |
T |
|
| Q |
393 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttga |
486 |
Q |
| |
|
||||| || |||||||||||||||||||| | ||| ||||||||| ||||||||| || ||||||||| | ||||||||||||||||||| |
|
|
| T |
21945494 |
ccatatgttccacttctttccttgatcccacgaacatatgacttaacatcttgaatctcagatgctattcgacgacgagggatcatagttttga |
21945401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 62 - 232
Target Start/End: Original strand, 22615530 - 22615700
Alignment:
| Q |
62 |
caacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacc |
161 |
Q |
| |
|
|||||||| |||| |||||| |||||| |||||||||| |||||||||| |||||||||| | || |||||||| ||||| ||||| || ||||| |
|
|
| T |
22615530 |
caacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaaca |
22615629 |
T |
|
| Q |
162 |
tttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctcttctcttcc |
232 |
Q |
| |
|
|| ||||||||||||| ||| || || ||||||||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
22615630 |
ttcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcc |
22615700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 93 - 571
Target Start/End: Original strand, 30989607 - 30990067
Alignment:
| Q |
93 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
192 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| | || |||||||| ||||| | || |||| ||||| || || | |||||||| ||| ||||| |||| |
|
|
| T |
30989607 |
tatgattgagacactatgatccatacacgacaatcaaagtgtccaatgacattcctgttgtcaaaaactttcttcgtaagagtggttttaccttgccctc |
30989706 |
T |
|
| Q |
193 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
292 |
Q |
| |
|
|||| ||||| ||||| || || |||||||| |||||||| | |||||| | ||||||| | | | | || || | |||| |||| |||| ||| |
|
|
| T |
30989707 |
ccatgcctactacagaaattaccgtgcgctcatctcttccctttaccaaccaatcaatcaacatgtctctctgtgtttcatagcccacaacttcagcttc |
30989806 |
T |
|
| Q |
293 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
392 |
Q |
| |
|
|||| || | ||||||| |||||| || ||||| || || || |||||||||||| | | ||||||||||||||||| |||| ||||| ||| |
|
|
| T |
30989807 |
ctcaacgtaaagagcagccgctcgaggatcgtgccacttagcattctggcttcctctagaattgcttgatccttgttcaaaagaacgttgg------aag |
30989900 |
T |
|
| Q |
393 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagt |
492 |
Q |
| |
|
||||| ||||||||||||||||||||| || | ||||| ||||||||| ||||||||| || ||||||||| | |||||||||| ||||| |
|
|
| T |
30989901 |
ccatatctttcacttctttccttgatctcacgaacagacgacttaatgtcttgaatctcagatgctattcgacgacgagggatcacagttt--------- |
30989991 |
T |
|
| Q |
493 |
gactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgat |
571 |
Q |
| |
|
|||| || |||||||||| | ||| ||| ||| | |||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
30989992 |
---taatcttgtggagtaaagatacacatccaggatcatgaggatgttgtctcacatggatcaaataatcatcgatgat |
30990067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 93 - 412
Target Start/End: Complemental strand, 22028164 - 22027851
Alignment:
| Q |
93 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
192 |
Q |
| |
|
|||||||| |||||||| | |||||||||| | || ||||||||||||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22028164 |
tatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22028065 |
T |
|
| Q |
193 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
292 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| | |||||| | || ||||||| ||| | || ||| ||| || |||| ||| ||| |
|
|
| T |
22028064 |
ccattcctaccacagacaccacagtgcgctcttcccttccctgtaccaaccaatcagtcaatctttttcttggcgcttcaaatcccacaacctcagcttc |
22027965 |
T |
|
| Q |
293 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
392 |
Q |
| |
|
|| || || | |||||||| ||||||||| | |||||| || || |||||||||| | | ||||| ||||||||||| |||| | ||||||| |
|
|
| T |
22027964 |
ctcgatgtaaagagcagccactcgagggtcgttccatttggcattcctgcttcctctagaattgcttgttccttgttcaaaagaacg------ttggaag |
22027871 |
T |
|
| Q |
393 |
ccatacctttcacttctttc |
412 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
22027870 |
ccatatctttcacttctttc |
22027851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 93 - 232
Target Start/End: Complemental strand, 22187152 - 22187013
Alignment:
| Q |
93 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
192 |
Q |
| |
|
|||||||| |||||||| | |||||||||| | || ||||||||||||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22187152 |
tatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22187053 |
T |
|
| Q |
193 |
ccattcctaccacagagatgacagtgcgctcttctcttcc |
232 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
22187052 |
ccattcctaccacagaaagaacagtgcgctcttcccttcc |
22187013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 93 - 486
Target Start/End: Complemental strand, 22052897 - 22052511
Alignment:
| Q |
93 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
192 |
Q |
| |
|
|||||||| |||||||| | |||||| ||| | || || ||||| |||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22052897 |
tatgattgagacactgtaatccatacccgacaatcaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22052798 |
T |
|
| Q |
193 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
292 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||| ||||| | |||| | | |||||||||| ||| | ||| ||| ||| || |||| ||| ||| |
|
|
| T |
22052797 |
ccattcctaccagagaaaccacagtgcgctcttcccttccctttaccatccaatcaatcaatctttttcttggtacttcaaatcccacaacctcagcttc |
22052698 |
T |
|
| Q |
293 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
392 |
Q |
| |
|
| | || | |||||||| ||||||||||| ||| || | || |||||||||| | | ||||| ||||||||||| |||| |||||| || |
|
|
| T |
22052697 |
cttgacgtaaagagcagccactcgagggtcataccacttggtattcctgcttcctctagaattgcttgttccttgttcaacagaacgttgga------ag |
22052604 |
T |
|
| Q |
393 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttga |
486 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||||| ||||| |||||||||| || ||||||||| | |||||| |||||||||||| |
|
|
| T |
22052603 |
ccatatctttcacttctttctgtgatcccatgaacagatgtcttaagatcttgaatcttagatgctattcgacgacgaggg-tcatagttttga |
22052511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 402 - 571
Target Start/End: Complemental strand, 21937014 - 21936845
Alignment:
| Q |
402 |
tcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatat |
501 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||| ||||||||| | |||||||||||||||| | |||| ||| ||| ||||||| ||||| |
|
|
| T |
21937014 |
tcacttctttccttgatcccacgaacagatgacttaatgtcttgaatctcagctgctattcgatggcgagaggtcatggttctgagtaagtgagaaatat |
21936915 |
T |
|
| Q |
502 |
tatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgat |
571 |
Q |
| |
|
|||| |||||||| | ||| ||| || | |||| | |||| |||||||||||||| ||||||||||| |
|
|
| T |
21936914 |
tatgaagtaaagctacacatccatgaccatgaggcttctgtcctacatggatcatatattcatcaatgat |
21936845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 377 - 486
Target Start/End: Original strand, 22615827 - 22615936
Alignment:
| Q |
377 |
aggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatc |
476 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| | ||||| ||||||| |||||||||| ||| | |||||||||||||||||| |
|
|
| T |
22615827 |
aggttggatttggaagccatatctttcacttctttccttgatcatacaaacagacgacttaacttcttgaatctttgacccaattcgatggcgagggatc |
22615926 |
T |
|
| Q |
477 |
atagttttga |
486 |
Q |
| |
|
| |||||||| |
|
|
| T |
22615927 |
aaagttttga |
22615936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 93 - 232
Target Start/End: Complemental strand, 21937317 - 21937178
Alignment:
| Q |
93 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
192 |
Q |
| |
|
|||| ||| |||||||||| |||||||||| | || |||||||| | ||| || |||||||| ||| | || || || ||||||| ||||||||| |||| |
|
|
| T |
21937317 |
tatgcttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctc |
21937218 |
T |
|
| Q |
193 |
ccattcctaccacagagatgacagtgcgctcttctcttcc |
232 |
Q |
| |
|
|||||||||||||||| | |||||||||||| | ||||| |
|
|
| T |
21937217 |
ccattcctaccacagaaacaacagtgcgctctgcccttcc |
21937178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 244
Target Start/End: Complemental strand, 22208175 - 22208033
Alignment:
| Q |
102 |
gacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattccta |
201 |
Q |
| |
|
|||||||||| |||||||||| | || |||| ||| || |||||||||||||| ||||| | ||||||||||| | ||| ||||| |||||||| || | |
|
|
| T |
22208175 |
gacactgtgatccatacacgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaa |
22208076 |
T |
|
| Q |
202 |
ccacagagatgacagtgcgctcttctcttccatccaccaacaa |
244 |
Q |
| |
|
|||| |||| |||||| |||||| ||||||||| | |||||| |
|
|
| T |
22208075 |
ccaccgagacaacagtgagctcttttcttccatctatcaacaa |
22208033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 93 - 232
Target Start/End: Complemental strand, 21930585 - 21930446
Alignment:
| Q |
93 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
192 |
Q |
| |
|
|||||||| |||||||||| |||||| || | | || ||||| |||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
21930585 |
tatgattgagacactgtgatccatactcggaaatgaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
21930486 |
T |
|
| Q |
193 |
ccattcctaccacagagatgacagtgcgctcttctcttcc |
232 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
21930485 |
ccattcctaccacagacaccacagtgcgctcttcccttcc |
21930446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 18967373 - 18967423
Alignment:
| Q |
179 |
ttttccttgtcctcccattcctaccacagagatgacagtgcgctcttctct |
229 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
18967373 |
ttttccttgccctcccattcctaccacagagatgatagtgccctcttctct |
18967423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 2749122 - 2749064
Alignment:
| Q |
165 |
ttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctc |
223 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||||||| || || || |||||||| |
|
|
| T |
2749122 |
ttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc |
2749064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 2807394 - 2807336
Alignment:
| Q |
165 |
ttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctc |
223 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||||||| || || || |||||||| |
|
|
| T |
2807394 |
ttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc |
2807336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 2838611 - 2838669
Alignment:
| Q |
165 |
ttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctc |
223 |
Q |
| |
|
||||||||||||| ||||||| | || |||||||||||||| || ||||| |||||||| |
|
|
| T |
2838611 |
ttggcaagagtggtttttcctagaccccccattcctaccactgatatgactgtgcgctc |
2838669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 36 - 570
Target Start/End: Complemental strand, 34980383 - 34979862
Alignment:
| Q |
36 |
tctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtc |
135 |
Q |
| |
|
||||||||||||| ||||| || |||||||||| ||||||||| | || ||||||||||||||||||||||||| |||||||||| |||| ||||||| |
|
|
| T |
34980383 |
tctcctttttgttcgtaaagcttcttcaacatgcgtctcagcaatacttcaatattgtatgattgtgacactgtgatccatacacgacattcaaagtgtc |
34980284 |
T |
|
| Q |
136 |
ccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatg--acagtgcgctcttctcttcca |
233 |
Q |
| |
|
||| ||||||||||| || ||||| ||||| |||||||| ||||||||| ||||||||||| || ||||||||| |||||||||||| ||||||| |
|
|
| T |
34980283 |
ccacaacctctttgctatcaaaaacttttttagcaagagttatttttccttgccctcccattccaactacagagatgacacagtgcgctctactcttccc |
34980184 |
T |
|
| Q |
234 |
tccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtcatgccatttcg |
333 |
Q |
| |
|
| |||||| | |||||||||||||||||||||||||||||||||||| |||| |||| | || ||||||||||||||||| ||||| |||||||| | |
|
|
| T |
34980183 |
tttaccaaccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagattcgttgatgtataaagcagccattcgtgggtcgtgccatttgg |
34980084 |
T |
|
| Q |
334 |
ccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatga |
433 |
Q |
| |
|
| |||||| |||||| |||| ||| ||||| |||||||||||| ||||| |||||||||||||| ||||||||| ||| ||| |
|
|
| T |
34980083 |
cattttggattcctcgaaagctgctagatcc---------------ttggatttggaaaccatatctttcacttctttctttgatcccacaaacaactga |
34979999 |
T |
|
| Q |
434 |
cttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatattatggagtaaagccatacacccaagattacga |
533 |
Q |
| |
|
||| ||| ||||||||| || |||||| || | |||| |||||||||||| |||||| ||| |||| ||||| || || || ||| ||| |||| |
|
|
| T |
34979998 |
cttgatgtcttgaatctcagatgctatttgacgaagaggagtcatagttttgagcaagtgaggaatcttattgagtagagatatgcatccaggatcacga |
34979899 |
T |
|
| Q |
534 |
ggatgttgtctcacatggatcatataatcatcaatga |
570 |
Q |
| |
|
|| || || | ||||||||||||||||||||||||| |
|
|
| T |
34979898 |
ggttgctgccctacatggatcatataatcatcaatga |
34979862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 90 - 367
Target Start/End: Complemental strand, 34989384 - 34989107
Alignment:
| Q |
90 |
ttgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtc |
189 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||| || ||||||||||| |||||||||| ||||||||| | |
|
|
| T |
34989384 |
ttgtttgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgcc |
34989285 |
T |
|
| Q |
190 |
ctcccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaa |
289 |
Q |
| |
|
||||||| || || ||||||||||||||||||||| ||||||| | |||| | | |||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
34989284 |
ctcccatcccaactacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaatctatttttgggttcttgaaagcctacgacttcagc |
34989185 |
T |
|
| Q |
290 |
ttcatcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttg |
367 |
Q |
| |
|
|||||| || ||||||||||||||||| | || | |||||| || |||||| ||||||||||| ||| |||||||| |
|
|
| T |
34989184 |
ttcatcgatgtataaagcagccattcgttgatcgttccatttggcgttttggtttcctctaaagctgctagatccttg |
34989107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 90 - 366
Target Start/End: Complemental strand, 34975549 - 34975273
Alignment:
| Q |
90 |
ttgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtc |
189 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||| || ||||||||||| |||||||||| ||||||||| | |
|
|
| T |
34975549 |
ttgtgtgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgcc |
34975450 |
T |
|
| Q |
190 |
ctcccattcctaccacagagatgacagtgcgctcttctcttccatccacc-aacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaa |
288 |
Q |
| |
|
||||||| || || ||||||||||||||||||||| ||||||| | ||| |||||| |||||||| | ||||||||||||||||||||||||| |||| |
|
|
| T |
34975449 |
ctcccatcccaactacagagatgacagtgcgctctactcttccctttaccaaacaat-caatcaatatttttttgggttcttgaaagcctacaacttcag |
34975351 |
T |
|
| Q |
289 |
attcatcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatcctt |
366 |
Q |
| |
|
|||||| || |||||||||||||||| || || |||||||| || |||||| |||||||||| ||| ||||||| |
|
|
| T |
34975350 |
cttcatcgatgaataaagcagccattcgtggatcgtgccatttggcattttggactcctctaaagctgctagatcctt |
34975273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 2305734 - 2305842
Alignment:
| Q |
40 |
ctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccat |
139 |
Q |
| |
|
||||||||| || || || |||||||||| |||||| ||| | |||||||||||||||||||||| ||||| |||||||||| |||| |||||||||| |
|
|
| T |
2305734 |
ctttttgttcgtgaagcttcttcaacatgcatctcaacaagacttctatattgtatgattgtgacattgtgatccatacacgacattcaaagtgtcccac |
2305833 |
T |
|
| Q |
140 |
gacctcttt |
148 |
Q |
| |
|
|||||||| |
|
|
| T |
2305834 |
aacctcttt |
2305842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 380 - 485
Target Start/End: Complemental strand, 34989109 - 34989004
Alignment:
| Q |
380 |
ttggatttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcata |
479 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||||| ||| ||| |||||| ||| ||||||||| || |||||| || ||||||| ||||| |
|
|
| T |
34989109 |
ttggatttggaaaccatatctttcacttctttctttgattccacaaacaactgacttgatgtcttgaatctcagaagctatttgacggcgaggagtcata |
34989010 |
T |
|
| Q |
480 |
gttttg |
485 |
Q |
| |
|
|||||| |
|
|
| T |
34989009 |
gttttg |
34989004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 97 - 225
Target Start/End: Complemental strand, 27294708 - 27294580
Alignment:
| Q |
97 |
attgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccat |
196 |
Q |
| |
|
|||| |||||||||| |||||||||||| || | |||||| ||||| || |||||||| ||||| || ||| | ||||||| |||||||||||||||||| |
|
|
| T |
27294708 |
attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgtcctcccat |
27294609 |
T |
|
| Q |
197 |
tcctaccacagagatgacagtgcgctctt |
225 |
Q |
| |
|
|||||||||||| | ||||||| ||||| |
|
|
| T |
27294608 |
tcctaccacagaaactacagtgccctctt |
27294580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 386 - 511
Target Start/End: Complemental strand, 27294472 - 27294344
Alignment:
| Q |
386 |
ttggaagccatacctttcacttctttccttgatcccatgcacagatga---cttaatgccttgaatcttggacgctattcgatggcgagggatcatagtt |
482 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| | | || ||| ||| ||| ||||||| | | |||||| ||||| |||||||||||||| |
|
|
| T |
27294472 |
ttggaagccatatctttcacttctttccttgatcccgcgaataggtgatcacttcatgtcttgaatttcatatgctatttgatggagagggatcatagtt |
27294373 |
T |
|
| Q |
483 |
ttgactaagtgactaatattatggagtaa |
511 |
Q |
| |
|
|||| ||||||| ||| ||||||||||| |
|
|
| T |
27294372 |
ttgagaaagtgaccaatcttatggagtaa |
27294344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 386 - 486
Target Start/End: Original strand, 873151 - 873251
Alignment:
| Q |
386 |
ttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttg |
485 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| | | ||| ||||||||||| | ||||||| || ||||||| |||||||| ||||||||||| |
|
|
| T |
873151 |
ttggaagccatatctttcacttctttccttaatccaaagaacatatgacttaatgtcctgaatctcatacattattcgacggcgagggttcatagttttg |
873250 |
T |
|
| Q |
486 |
a |
486 |
Q |
| |
|
| |
|
|
| T |
873251 |
a |
873251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 386 - 486
Target Start/End: Original strand, 1234428 - 1234528
Alignment:
| Q |
386 |
ttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttg |
485 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| | | ||| ||||||||||| | ||||||| || ||||||| |||||||| ||||||||||| |
|
|
| T |
1234428 |
ttggaagccatatctttcacttctttccttaatccaaagaacatatgacttaatgtcctgaatctcatacattattcgacggcgagggttcatagttttg |
1234527 |
T |
|
| Q |
486 |
a |
486 |
Q |
| |
|
| |
|
|
| T |
1234528 |
a |
1234528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 29610855 - 29610903
Alignment:
| Q |
75 |
agcaacccctctatattgtatgattgtgacactgtgacccatacacgat |
123 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
29610855 |
agcaatccttctatattgtatgattgtgatactgtgatccatacacgat |
29610903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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