View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11563_low_4 (Length: 438)
Name: NF11563_low_4
Description: NF11563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11563_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 70 - 434
Target Start/End: Complemental strand, 16003978 - 16003614
Alignment:
| Q |
70 |
agaaatgcttattcctacgaaagtagtttctaagaattccacgaatgacgtgtgtatcctatgtggagaaaactgcataagtcaacaataccatctctct |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
16003978 |
agaaatgcttattcctacgaaagtagtttctaagaattccacgaatgacgtgtgtatcctatgtggagaaaattacataagtcaacaataccatctctct |
16003879 |
T |
|
| Q |
170 |
catttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctagctctctttttcccatgcttttttatagctcttaccaccataaac |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
16003878 |
catttatgacacacggttaccaaacgtaaacaccctcttcttcttttattctctagctgtctttttcccatgcttttctatagctcttaccaccataaac |
16003779 |
T |
|
| Q |
270 |
atggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctctattgatttccttccaattctcaaaattaaagacctttgttgttgat |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16003778 |
atggttctgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttcctttcaattctcaaaattaaagacctttgttgttgat |
16003679 |
T |
|
| Q |
370 |
caaatattcaccctggttccatttttctccacaagtcgagtcataccgctatttctgtgctcctc |
434 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
16003678 |
caaatattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgtgttcctc |
16003614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 68 - 434
Target Start/End: Complemental strand, 26795362 - 26794994
Alignment:
| Q |
68 |
agagaaatgcttattcctacgaaagtagtttctaagaattccacgaatgacgtgtgtatcctatgtggagaaaactgcataagtcaacaataccatctct |
167 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
26795362 |
agagaaatgcttattcctacgaaa-tagtttctaagaattccacgaatgacgtgtgtatcctatgtggagaaaatttcataagtcaacaataccatctct |
26795264 |
T |
|
| Q |
168 |
ctcatttatgacacacggttaccaaacgtaaacaccctcttcttctt---ttgttctctagctctctttttcccatgcttttttatagctcttaccacca |
264 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || |||| ||||||||| |
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| T |
26795263 |
ctcatttatgacacacggttaccaaacgtaaacaccctcttcttcttcttttgttctctagctgtctttttcccatgcttttctacagctgttaccacca |
26795164 |
T |
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| Q |
265 |
taaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctctattgatttccttccaattctcaaaattaaagacctttgttg |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26795163 |
taaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttgttg |
26795064 |
T |
|
| Q |
365 |
ttgatcaaatattcaccctggttccatttttctccacaagtcgagtcataccgctatttctgtgctcctc |
434 |
Q |
| |
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||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
26795063 |
ttgatcaaatattcaccctagttccgttttcctccacaagtcgagtcataccgctatttatgtgttcctc |
26794994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 69 - 424
Target Start/End: Complemental strand, 40722326 - 40721968
Alignment:
| Q |
69 |
gagaaatgcttattcctacgaaagtagtttctaagaattccacgaatgacgtgtgtatcctatgtggagaaaactgcataagtcaacaatacca---tct |
165 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40722326 |
gagaaatgtttattcctacgaaagtagtttctaagaattccacaaatgacgtgtgtatcctatgtggagaaaactgcataagtcaacaataccaccatct |
40722227 |
T |
|
| Q |
166 |
ctctcatttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctagctctctttttcccatgcttttttatagctcttaccaccat |
265 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
40722226 |
ctctcgtttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccat |
40722127 |
T |
|
| Q |
266 |
aaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctctattgatttccttccaattctcaaaattaaagacctttgttgt |
365 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40722126 |
aaacatggttatgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgt |
40722027 |
T |
|
| Q |
366 |
tgatcaaatattcaccctggttccatttttctccacaagtcgagtcataccgctatttc |
424 |
Q |
| |
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|||||||||||||||||||||| | |||| | | ||||||||||||||||||||||||| |
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| T |
40722026 |
tgatcaaatattcaccctggtttcgttttccacgacaagtcgagtcataccgctatttc |
40721968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 72 - 373
Target Start/End: Original strand, 27221778 - 27222063
Alignment:
| Q |
72 |
aaatgcttattcctacgaaagtagtttctaagaattccacgaatgacgtgtgtatcctatgtggagaaaactgcataagtcaacaataccatctctctca |
171 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |
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| T |
27221778 |
aaatgctcattcctacgaaa-tagtttctaagaattccacgaatgacgtgtgtatcctacgtggataaaactgtataagtcaaca--------------- |
27221861 |
T |
|
| Q |
172 |
tttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctagctctctttttcccatgcttttttatagctcttaccaccataaacat |
271 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||| || |
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| T |
27221862 |
tttatgacacacggttaccaaacgtaaacaacctcttcttcttttgttctctagctgtctttttcccatgcttttctgcagctcttaccaccataaatat |
27221961 |
T |
|
| Q |
272 |
ggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctctattgatttccttccaattctcaaaattaaagacctttgttgttgatca |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27221962 |
ggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttgttgttgatca |
27222061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33590478 - 33590413
Alignment:
| Q |
1 |
atgccacgtgtcctcttattggaaaacaaatcagaccaaattttttatcatagaaaggcattcatat |
67 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
33590478 |
atgccacgtgtcctgttattggaaaacaaatcagatcaaa-tttttatcatagaaaggcattcatat |
33590413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33597650 - 33597585
Alignment:
| Q |
1 |
atgccacgtgtcctcttattggaaaacaaatcagaccaaattttttatcatagaaaggcattcatat |
67 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
33597650 |
atgccacgtgtcctgttattggaaaacaaatcagatcaaa-tttttatcatagaaaggcattcatat |
33597585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 27222822 - 27222875
Alignment:
| Q |
374 |
tattcaccctggttccatttttctccacaagtcgagtcataccgctatttctgt |
427 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||||| ||||||||||| |
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| T |
27222822 |
tattcaccctggttccgttttcctccacaagtcgagtcatactgctatttctgt |
27222875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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