View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11563_low_5 (Length: 397)
Name: NF11563_low_5
Description: NF11563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11563_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 31753767 - 31753591
Alignment:
| Q |
13 |
tagcataggtagagcatatatgttcttgcagagatagaaagaaccacccacttcaccccccgtgcacttgctggacccacccaccatttaagtgaccata |
112 |
Q |
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| T |
31753767 |
tagcataggtagagcatatatgttcttgcagagatagaaagaaccacccacttcaccccccgtgcacttgctggacccacccaccatttaagtgaccata |
31753668 |
T |
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| Q |
113 |
gctcgtttgtaatccatcataatagagtttaatggacatgcgttgcgagtcaggagcaactacgaatcaatgatatat |
190 |
Q |
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| T |
31753667 |
gctcgtttgtaatccatcataatagagtttaatggacatgcattgcgagt-agaagcaactacgaaccaatggtatat |
31753591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 213 - 383
Target Start/End: Complemental strand, 31753595 - 31753423
Alignment:
| Q |
213 |
tatattttcacttaagactttgaatcattatgattcaagtatatgagttacttctattgatctcttatgtatattcaacaatgaattcatttacaaaata |
312 |
Q |
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| T |
31753595 |
tatattttcacttaagactttgaatcattatgattcaagtatatgagttacttctattgatctcttatgtatattcaacaatgaattcatttacaaaata |
31753496 |
T |
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| Q |
313 |
tatttctatgttgaaaaactcaacatgaaaatatata--nnnnnnnnaagtaaaatatgtgcttagctaaaag |
383 |
Q |
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| T |
31753495 |
tatttccatgttgaaaaactcaacatgaaaatatatattttttttttaagtaaaatatgtgcttagctaaaag |
31753423 |
T |
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