View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_high_11 (Length: 444)
Name: NF11564_high_11
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 12506984 - 12507392
Alignment:
| Q |
20 |
atgactttataggacaatgagagtcagaaggaatagagtaatgttgtgctcgtatatatgttaaggaaacacaacataaagtgagacattaaatctgata |
119 |
Q |
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| T |
12506984 |
atgactttataggacaatgagagtcagaaggaatagagtaatgttgtgctcgtata-----------aacacaacataaagtgagacattaaatctgata |
12507072 |
T |
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| Q |
120 |
ttgataggatcgtaagaannnnnnnnaaccatcacattaaagattgtgaggaaaaatcttgtaagttgcctattgattaaggcatatgggtattt-atat |
218 |
Q |
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| T |
12507073 |
tcgataggatcgtaagaattttttttaaccatcacattaaagattgtgaggaaaaatcttgtaagttgcctattgattaaggcatatgtgtattttatat |
12507172 |
T |
|
| Q |
219 |
agtataggtcgattatttttgaaagagcagaaaatcgtccctatcaagagtccacaactgcattaattagcatcaatttattggttacctttcaactatt |
318 |
Q |
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| T |
12507173 |
agtataggtcgattatttttgaaagagcacaaaatcgtccctatcaagagtccacaactgcattaattagcatcaatttattggttacctttcaactatt |
12507272 |
T |
|
| Q |
319 |
aattaaagcatgccaactactaatgctgctagcccatattttcttctctcaaccattttgcattactgctatgttatcatcacctaatctccattatgat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| |
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| T |
12507273 |
aattaaagcatgccaactactaatgctgctagcccatattttcttctctcaaccattttgcattactgcgatattatcatcacctaatttccattatgat |
12507372 |
T |
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| Q |
419 |
ggtattttatcctttgcttct |
439 |
Q |
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|||| ||||||||||| |||| |
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| T |
12507373 |
ggta-tttatcctttgtttct |
12507392 |
T |
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