View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11564_high_15 (Length: 407)
Name: NF11564_high_15
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 171 - 393
Target Start/End: Complemental strand, 14229219 - 14228994
Alignment:
| Q |
171 |
tattgagaactctaacatacatagaaattagactttatgaccgttaaaacacacaaaggccacacaaaattactccatacttt----tcttatattagac |
266 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14229219 |
tattgagaactctaacctacatagaaattatactttatgaccctcaaaacacaaaaaggccacacaaaattactccatacttttctttcttatattagag |
14229120 |
T |
|
| Q |
267 |
tatctttatactcttttcaatttatatcattagtttgtgtttaaggaaggnnnnnnnnncagttttatcattttatgaccacagaactatggactacgtg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14229119 |
tatctttatactcttttcaatttatatcattagtttgtctttaaggaa-aaaaaaaaaacagttttatcattttatgaccacagaactatggattacgtg |
14229021 |
T |
|
| Q |
367 |
gttgataagtatggtaagggaacaatt |
393 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
14229020 |
gttgataagtatggtaagggaacaatt |
14228994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 14222692 - 14222631
Alignment:
| Q |
326 |
cagttttatcattttatgaccacagaactatggactacgtggttgataagtatggtaaggga |
387 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||||| |||||||||||||||||||| |
|
|
| T |
14222692 |
cagttttatcatttcgtgaccacagagatattgactacgtgattgataagtatggtaaggga |
14222631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 11441939 - 11441786
Alignment:
| Q |
18 |
ggtggttggggcggcaatgatcaggacaacagcgaagacggtgcttgcggcttttatgaaggtgctggcctagagacgtgtacgcacaggtgtattgaaa |
117 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||| |
|
|
| T |
11441939 |
ggtggttggggcgacaatgatcaagacaacggcggagacggtgcttgcggcttttatgaaggtgctggccaagagacgtgtaaacacagatgtgttgaaa |
11441840 |
T |
|
| Q |
118 |
gcttgttcgtgtcggttcgtgcggnnnnnnnatcgtgtgatatagcaacactct |
171 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| ||||||||||| |||| |
|
|
| T |
11441839 |
gcttgttcgtgtgggttcgtgcggtttttttatcgtgcgatatagcaacgctct |
11441786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 47656458 - 47656579
Alignment:
| Q |
18 |
ggtggttggggcggcaatgatcaggacaacagcgaagacggtgcttgcggcttttatgaaggtgctggcctagagacgtgtacgcacaggtgtattgaaa |
117 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||||| ||| |||||| |
|
|
| T |
47656458 |
ggtggttggggcgacaatgatcaagacaacggcggagacggtgcttgcggcttttatgaaggtgctggtcaagagacgtgtaagcacagatgtgttgaaa |
47656557 |
T |
|
| Q |
118 |
gcttgttcgtgtcggttcgtgc |
139 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
47656558 |
gcttgttcgtgtgggttcgtgc |
47656579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 54922907 - 54923016
Alignment:
| Q |
18 |
ggtggttggggcggcaatgatcaggacaacagcgaagacggtgcttgcggcttttatgaaggtgctggcctagagacgtgtacgcacaggtgtattgaaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||| ||| ||| || |
|
|
| T |
54922907 |
ggtggttggggcggcaatgaccaggacaacggcgaagacggtgcttgcgtcttttatgacggtgctagccaagagacgtgtacgcacagatgtgttg-aa |
54923005 |
T |
|
| Q |
118 |
gcttgttcgtg |
128 |
Q |
| |
|
||||||||||| |
|
|
| T |
54923006 |
gcttgttcgtg |
54923016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University