View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_high_19 (Length: 358)
Name: NF11564_high_19
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 51112957 - 51112623
Alignment:
| Q |
1 |
tgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaatatgcttcagacgct |
100 |
Q |
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| T |
51112957 |
tgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaatatgcttcagacgct |
51112858 |
T |
|
| Q |
101 |
gcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgctgctgagaaaacca |
200 |
Q |
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| T |
51112857 |
gcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgctgctgagaaaacca |
51112758 |
T |
|
| Q |
201 |
aaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgaaaagaccaaacattatgctgctgacgaaagctatgcagatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112757 |
aaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgagaagaccaaacattatgctgctgacgaaagctatgcagatga |
51112658 |
T |
|
| Q |
301 |
tgatgatgatgcagaggacaacagagactttgccg |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
51112657 |
tgatgatgatgcagaggacaacagagactttgccg |
51112623 |
T |
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