View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11564_high_21 (Length: 328)
Name: NF11564_high_21
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 32272684 - 32272382
Alignment:
| Q |
8 |
aagcacagatccttttgttaaattaaaaaatcatactattcagcattgcatagatactgacatattgttacttttataaataatagtgttattagtacat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32272684 |
aagcacagatccttttgttaaattaaaaaatcatactattcagcattgcatagatactgacatattgttacttttataaataa--gtgttattagtacat |
32272587 |
T |
|
| Q |
108 |
atgatttccgacaccgtatcttgacaccatataacattgagtgtgatcttgtcaaaagaaaacatttagtatgaacaatggtcccgaggagagagaacaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32272586 |
atgatttccgacaccgtatcttgacaccatataacattgagtgtgatcttgtcaaaagaaaacattgagtatgaacaatggtcccgaggagagagaacaa |
32272487 |
T |
|
| Q |
208 |
acatcggatgataaagataatataatttaaaactcgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgcttttataa |
307 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32272486 |
acatcggatgagaaagataatataatttaaaacttgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgcttttataa |
32272387 |
T |
|
| Q |
308 |
attat |
312 |
Q |
| |
|
||||| |
|
|
| T |
32272386 |
attat |
32272382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University