View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_high_22 (Length: 300)
Name: NF11564_high_22
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_high_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 28021011 - 28021310
Alignment:
| Q |
1 |
aaggcttgaaaacttacctctgtggtatgtgcttgaaaaactgcacacttagtataatacaaattacaaaccttcactctacaatccagtccacatcatt |
100 |
Q |
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| T |
28021011 |
aaggcttgaaaacttacctctgtggtatgtgcttgaaaaactgcacacttagtataatacaaattacaaaccttcactctacaatccagtccacatcatt |
28021110 |
T |
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| Q |
101 |
tgaggtcatttataacnnnnnnnncggctccatttattatacttgtcagttaccacaattcaaggagttgttttataagggtcgtgaaattttcgggaag |
200 |
Q |
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| T |
28021111 |
tgaggtcatttataacaaagaaaacggctccatttattatacttgtcagttaccacaattcaaggagttgttttataagggtcgtgaaattttcgagaag |
28021210 |
T |
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| Q |
201 |
cttgttttcgctaaaactagcattttcctattataaattttaatgaaaattttaaaattatatgttcgctcgcgcaacatgcaattccgaatctagtttc |
300 |
Q |
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| T |
28021211 |
cttgttttcgctaaaactagcattttcctattataaattttaatgaaaattttaaaattatacgttcgctcgcgcaacatgcaattctgaatctagtttc |
28021310 |
T |
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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 29348075 - 29348158
Alignment:
| Q |
126 |
ggctccatttattatacttgtcagttaccacaattcaaggagttgttttataagggtcgtgaaattttcgggaagcttgttttcg |
210 |
Q |
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| T |
29348075 |
ggctccatttattataattggcagttaccacaattcaagg-gttgttttataaaggtcgtaaaaatctcgggaagcttgttttcg |
29348158 |
T |
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