View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_high_27 (Length: 259)
Name: NF11564_high_27
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 13616174 - 13615948
Alignment:
| Q |
15 |
caaaggcttacaaaatataggtagtttatttgaagctcaagaagccactttaatggataaaagagacctcgatgaattattcttgtcatggcagcacaaa |
114 |
Q |
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| T |
13616174 |
caaaggcttacaaaatataggtagtttatttgaagctcaagaagccaatttaatggataaaaaagacctcgatgaattattcttgtcatggcagcacaaa |
13616075 |
T |
|
| Q |
115 |
gattcatctgtcaagacccctattattagtgatgatcaagtacttgaagtgcttcacctcatacaaatctcaagagcttgaaaatatattcttacaaagg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
13616074 |
gattcatctgtcaagacccctattattagtgatgatcaagtacttgaagtgcttcacctc-tccaaatctcaagagcttgaaaatatattcttacaaagg |
13615976 |
T |
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| Q |
215 |
attatgcttctcaagttggatcagaact |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
13615975 |
attatgcttctcaagttggatcagaact |
13615948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 20297131 - 20297217
Alignment:
| Q |
15 |
caaaggcttacaaaatataggtagtttatttgaagctcaagaagccactttaatggataaaagagacctcgatgaattattcttgtc |
101 |
Q |
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|||||||||| || || | || ||| ||| ||||||||||||||||| ||| |||| ||||| |||||| ||||||||| |||||| |
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| T |
20297131 |
caaaggcttaaaagatgttggcagtatatctgaagctcaagaagccaatttgatgggtaaaaaagaccttcatgaattatgcttgtc |
20297217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 7582262 - 7582487
Alignment:
| Q |
18 |
aggcttacaaaatataggtagtttatttgaagctcaagaagccactttaatggataaaagagacctcgatgaattattcttgtcatggcagcacaaagat |
117 |
Q |
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| T |
7582262 |
aggcttaccaaatgtcggtagtttatctgaagctcaagaagccaacttgatgggtaaaaaagacctcgatgaattatgcttgtcatggttgcacaatgat |
7582361 |
T |
|
| Q |
118 |
tcatctgtcaagacccctattattagtgatgatcaagtacttgaagtgcttc-acctcatacaaatctcaagagcttgaaaatatattcttacaaaggat |
216 |
Q |
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|||||||| |||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| ||||||||| | |
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| T |
7582362 |
tcatctgttaagaccactattattagtgacgatcaagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtt |
7582461 |
T |
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| Q |
217 |
tatgcttctcaagttggatcagaact |
242 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
7582462 |
tatgcttcccaagttggatcagaact |
7582487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 7098987 - 7098759
Alignment:
| Q |
15 |
caaaggcttacaaaatataggtagtttatttgaagctcaagaagccactttaatggataaaagagacctcgatgaattattcttgtcatggcagcacaaa |
114 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||||||| ||||||||| |||||||| ||||| ||||||||||||||||| |||||||||| || |
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| T |
7098987 |
caaaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaagggtggt |
7098888 |
T |
|
| Q |
115 |
gattcatctgtcaagacccctattattagtgatgatcaagtacttgaagtgcttca-cctcatacaaatctcaagagcttgaaaatatattcttacaaag |
213 |
Q |
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||| || |||||||||| ||| |||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
7098887 |
gatacacctgtcaagactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaag |
7098788 |
T |
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| Q |
214 |
gattatgcttctcaagttggatcagaact |
242 |
Q |
| |
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|||||||||| ||||||||||||||||| |
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| T |
7098787 |
gattatgctttccaagttggatcagaact |
7098759 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 17982470 - 17982262
Alignment:
| Q |
35 |
gtagtttatttgaagctcaagaagccactttaatggataaaagagacctcgatgaattattcttgtcatggcagcacaaagattcatctgtcaagacccc |
134 |
Q |
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|
||||||||| ||||| | ||||||| | ||| || | ||||| ||||||| ||||||||| | ||||||||| |||| ||| |||||||||||||||||| |
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| T |
17982470 |
gtagtttatctgaagttgaagaagcaaattttataggtaaaaaagacctcaatgaattatgcctgtcatggcggcaccaaggttcatctgtcaagacccc |
17982371 |
T |
|
| Q |
135 |
tattattagtgatgatcaagtacttgaagtgcttc-acctcatacaaatctcaagagcttgaaaatatattcttacaaaggattatgcttctcaagttgg |
233 |
Q |
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||||||||||||||||| ||| |||||||||||| |||||| | |||||| ||| ||||||||||||||| |||| |||||||||||||| |||||||| |
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| T |
17982370 |
tattattagtgatgatcgtgtatttgaagtgcttcaacctcacagaaatcttaagggcttgaaaatatattattaccaaggattatgcttcccaagttgg |
17982271 |
T |
|
| Q |
234 |
atcagaact |
242 |
Q |
| |
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||||||||| |
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| T |
17982270 |
atcagaact |
17982262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 17418809 - 17418883
Alignment:
| Q |
127 |
aagacccctattattagtgatgatcaagtacttgaagtgcttc-acctcatacaaatctcaagagcttgaaaata |
200 |
Q |
| |
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|||||||||||| |||||| ||| ||| ||||||||||||||| |||||| ||||||||||| ||||||||||| |
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| T |
17418809 |
aagacccctattgttagtgctgagcaactacttgaagtgcttcaacctcactcaaatctcaagtgcttgaaaata |
17418883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 30243019 - 30243086
Alignment:
| Q |
134 |
ctattattagtgatgatcaagtacttgaagtgcttc-acctcatacaaatctcaagagcttgaaaata |
200 |
Q |
| |
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|||| ||||||| ||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||| |
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| T |
30243019 |
ctataattagtgctgagcaagtacttgaagtgcttcaacctcactcaaatctcaagtgcttgaaaata |
30243086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 26706885 - 26706817
Alignment:
| Q |
37 |
agtttatttgaagctcaagaagccactttaatggataaaagagacctcgatgaattattcttgtcatgg |
105 |
Q |
| |
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||||||| ||||||||||||||||| ||| |||| |||| | ||||||| |||||| |||||||||| |
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| T |
26706885 |
agtttatctgaagctcaagaagccaatttgatggggaaaaaaaacctcgaaaaattatgcttgtcatgg |
26706817 |
T |
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