View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_high_4 (Length: 677)
Name: NF11564_high_4
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 151 - 662
Target Start/End: Original strand, 36161358 - 36161869
Alignment:
| Q |
151 |
cattcatatacaaataatgtaataaatcaatcaaaacatgtttcagagaaaggggttgatggtactacaagagctgaatctgaggaggctattcatataa |
250 |
Q |
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| T |
36161358 |
cattcatatacaaataatgtaattaatcaatcaaaacatgtttcagagaaaggggttgatggtgctacaagagctgaatctgaggaggctattcatataa |
36161457 |
T |
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| Q |
251 |
aagttgaagatcctcaagttgcaccaaagagtcctgttctttctcgtgtgccatcaagtccattggagaatactgaattaggaccattgtgtttgtgtcc |
350 |
Q |
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| T |
36161458 |
aagttgaagatcctcaagttgcaccaaagagtcctgttctttctcgtgtgccatcaagtccattggagaatactgaattagcaccattgtgtttgtgtcc |
36161557 |
T |
|
| Q |
351 |
aagaggaagatggtagttaattaannnnnnnaatacttgctagtttgaatagtttttatatctgatttcaaaagtttaaccttagacttactgtggcnnn |
450 |
Q |
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| T |
36161558 |
aagaggaagatggtaattaattaatttttttaatacttgctagtttgaataatttttatatctgatttcaaaagtttaaccttagacttactgtggcttt |
36161657 |
T |
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| Q |
451 |
nnnnnaattgatttaatttcaggtatgcaatttgctgtttctttattctggtttgccttgtagctgttatcctttttatcattgatatcgttcatcatca |
550 |
Q |
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| T |
36161658 |
tttttaattgatttaatttcaggtatgcaatttgctgtttctttattctggtttgccttgtagctgttatcctttttatcattgatatcgttcatcatca |
36161757 |
T |
|
| Q |
551 |
taaataaagctacatgaattttctcaattagagaatggaaaatgacgttaggatgatggttagatgcatgtaaaatgacgttaaatgtttttggtgttat |
650 |
Q |
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| T |
36161758 |
taaataaagctacatgaattttctcaattagagaatggaaaatgacgttaggatgatggttagatgcatgtaaaatgacgttaaatgtttttggtgttat |
36161857 |
T |
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| Q |
651 |
ccctcaaaaaat |
662 |
Q |
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| T |
36161858 |
ccctcaaaaaat |
36161869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 36161208 - 36161302
Alignment:
| Q |
1 |
aatgaatcataatcataagcctttgtttgaggccaataacaaaggtatggtactgatttaaagcattacagtcacaaaatcaactccttgtacat |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36161208 |
aatgaatcataatcataagcctttgtttgaggccaataacaaaggtatggtactgatttaaagcattacagtcacaaaatcaactccttgtacat |
36161302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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