View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_high_9 (Length: 480)
Name: NF11564_high_9
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 401
Target Start/End: Complemental strand, 55643 - 55253
Alignment:
| Q |
11 |
cacagacatatagacactgatagtaatataaaataaggtgattgtatgtaatcataagtctcaacgtttgacattgagacatgtgagtgtcagacattgg |
110 |
Q |
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| T |
55643 |
cacagacatatagacaccgatagtaataaaaaataaagtgattgtatgtaatcataagtgtcaacgtttgacactgagacatgtgagtgtcagacattgg |
55544 |
T |
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| Q |
111 |
catgtgtctgacacctgaacacaccttcaatttgaagtgtcggtattactttccaaatcatttctaggtttaaatatttattgttgtcattattttggtg |
210 |
Q |
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| T |
55543 |
catgtgtctgacacctgaacacacctttaatttgaagtgtcggtattactttccaaatcatttctaggtttaaatatttattgttgtcattattttggtg |
55444 |
T |
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| Q |
211 |
ggcatataggccattcaactatacgtgtgctgcaagtatatagaatccataagaatctacaaatgtttctgtacggatgcacctaaagcttgtgcatcat |
310 |
Q |
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| T |
55443 |
ggcatataggccattcaactatacgtgtgctgcaagtatatagaatccataagaatctacaaatgtttctgtacggatgcacctaaagcttgtgcatcat |
55344 |
T |
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| Q |
311 |
tcacatcatatcatataagagaagctttcacaaagtatgttatagatttctcgcatcgatttggctattttctcacattaacaaagtacgt |
401 |
Q |
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| T |
55343 |
tcacatcatatcatataagagaagctttcacaaagtatgttatagatttctcgcattgattttgctattttctcacattaacaaagtacgt |
55253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 55252 - 55215
Alignment:
| Q |
425 |
tatttatgtatagtttagctgtgtcgtaaagatgcaga |
462 |
Q |
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| T |
55252 |
tatttatgtatagtttagctgtgtcgtaaagatgcaga |
55215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 154
Target Start/End: Complemental strand, 22882589 - 22882560
Alignment:
| Q |
125 |
ctgaacacaccttcaatttgaagtgtcggt |
154 |
Q |
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| T |
22882589 |
ctgaacacaccttcaatttgaagtgtcggt |
22882560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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