View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_low_10 (Length: 456)
Name: NF11564_low_10
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Complemental strand, 18222239 - 18221808
Alignment:
| Q |
17 |
aagtactatatgataaaaggtattgtttaaatttaaattttagtcattttcagtaacaatatatcaagtactatgatgatttgattgggatttgaataat |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18222239 |
aagtactatatgataaagggtattgtttaaatttaaattttagtcattttcagtaacaatat--caagtactatgatgatttgattgggatttgaataat |
18222142 |
T |
|
| Q |
117 |
ttgtgtcccttttattctataccaggaagaggaccatgtccacgtcaacaaggggaaaagcnnnnnnntctcttttttggaccaacctgtcctgctcttc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
18222141 |
ttgtgtcccttttattctataccaggaagaggaccatgtccacgtcaacaaggggaaaagcaaaaaaatctcttttttggacaaacctgtcctgctcttc |
18222042 |
T |
|
| Q |
217 |
ccacccacctctgattcaacttatatcttgggtaatatccctga----aatggccattctatatcctttttgcaccgtctaaaaattgtatctatcacat |
312 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18222041 |
ccacccacctctgattcaacttatatcttaggtaatatccatgaaattaatggccattttatatcctttttgcaccgtctaaaaattgtatctatcacat |
18221942 |
T |
|
| Q |
313 |
tttccaacnnnnnnnnngctaacaaatgatgactttcattatatggtaataattatatgtaatataatcacaatttacacctgtttggatttgttaattt |
412 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18221941 |
tttccaac-ttttttttgctaacaaatgatgactttcattatatggtaataattatatgtaatataatcacaatttacacctgtttggatttgttaattt |
18221843 |
T |
|
| Q |
413 |
tgttatgcatatctatttactttgtccttacccta |
447 |
Q |
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||||||| ||||| ||||||||||||||||||||| |
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| T |
18221842 |
tgttatgtatatccatttactttgtccttacccta |
18221808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 5076778 - 5076940
Alignment:
| Q |
17 |
aagtactatatgataaaaggtattgtttaaatttaaattttagtcatt-ttcagtaacaatatatcaagtactatgatgatttgattgggatttgaataa |
115 |
Q |
| |
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||||||||||||||||| |||||||| |||||| |||| | ||||||| |||||||||| ||| |||||||||||||||||| |||| ||||||||||| |
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| T |
5076778 |
aagtactatatgataaagggtattgtataaattaaaatatgagtcattattcagtaacattat--caagtactatgatgattttattgtgatttgaataa |
5076875 |
T |
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| Q |
116 |
tttgtgtcccttttattctataccag---gaagaggaccatgtccacgtcaacaaggggaaaagc |
177 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
5076876 |
tttgtgtcccttttattctataccaggaagaagaggaccatgtccacgtcaacaagggaaaaagc |
5076940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 5076980 - 5077040
Alignment:
| Q |
235 |
acttatatcttgggtaatatccctgaaatggccattctatatcctttttgcaccgtctaaa |
295 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||| |
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| T |
5076980 |
acttatatcttaggtaatacccctgaaatggccattaagtatcctttatgcaccgtctaaa |
5077040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 43014029 - 43013824
Alignment:
| Q |
17 |
aagtactatatgataaaaggtattgtttaaatttaaattttagtcattttcagtaacaatatatcaagtactatgatgatttgattgggatttgaataat |
116 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
43014029 |
aagtactatatgataaagggtattgtataaattaaaatttcagtcattttcagtaacaatat--caagtactatgatgattttattgggatttgaataat |
43013932 |
T |
|
| Q |
117 |
ttgtgtcccttttatt---ctataccag---gaagaggaccatgtccacgtcaacaaggggaaaagcnnnnnnntctcttttttggaccaacctgtcctg |
210 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| || |
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| T |
43013931 |
ttgtgtcccttttattctactataccaggaagaagaggaccatgtccacgtcaacaaggggaaaagcaaaataatctctgctttggacaaacctgtcttg |
43013832 |
T |
|
| Q |
211 |
ctcttccc |
218 |
Q |
| |
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|||||||| |
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|
| T |
43013831 |
ctcttccc |
43013824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 385
Target Start/End: Complemental strand, 43013732 - 43013677
Alignment:
| Q |
330 |
gctaacaaatgatgactttcattatatggtaataattatatgtaatataatcacaa |
385 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
43013732 |
gctaataaatgttgactttcattatatggtaataattagatgtactataattacaa |
43013677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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