View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_low_13 (Length: 432)
Name: NF11564_low_13
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 13647830 - 13648234
Alignment:
| Q |
18 |
ctcttcaccacctcctcaatacaaccaaaaaatcatcatttccatcatcttttttctttaagagcaatttcttcaaagtggatagaacctgcatggagtg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13647830 |
ctcttcaccacctcctcaatacaaccaaaaaatcatcatttccatcatcttttttctctaagagcaatttcttcaaagtggatagaacctgcatggcgtg |
13647929 |
T |
|
| Q |
118 |
gcttgactctcaacaattgaaatcagttatatatgttagctttggaagcactacaccaatgaagagagaagaaataattgagatttggcatggtttattg |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13647930 |
gcttgactctcaaccattgaaatcagttatatatgttagctttggaagcactacaccaatgaagagagaagaaataattgagatttggcatggtttattg |
13648029 |
T |
|
| Q |
218 |
aatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaagggactagtaaggaaaaagggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
13648030 |
aatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaagggactcgtaaggaaaaaggtt |
13648129 |
T |
|
| Q |
318 |
tgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaactttggaaagtgtggt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13648130 |
tgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcttttttgacacataatgggtggaattcaactttggaaagtgtggt |
13648229 |
T |
|
| Q |
418 |
ctgtg |
422 |
Q |
| |
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|||| |
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| T |
13648230 |
ttgtg |
13648234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 77 - 422
Target Start/End: Original strand, 13658417 - 13658762
Alignment:
| Q |
77 |
aagagcaatttcttcaaagtggatagaacctgcatggagtggcttgactctcaacaattgaaatcagttatatatgttagctttggaagcactacaccaa |
176 |
Q |
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||||||||||||||| ||||||||||||| |||||| |||||||| ||||||| |||||||| ||| |||||||||||||||| |||| || |||| |
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| T |
13658417 |
aagagcaatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaa |
13658516 |
T |
|
| Q |
177 |
tgaagagagaagaaataattgagatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggatt |
276 |
Q |
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||||| |||||||||| |||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
13658517 |
tgaagggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggact |
13658616 |
T |
|
| Q |
277 |
attaagtgagcttgaggaagggactagtaaggaaaaagggttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcgttt |
376 |
Q |
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||| | ||||||||||||||||||| ||| || |||||| ||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| ||| |
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| T |
13658617 |
attgaaggagcttgaggaagggactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttgtcacacaaagcaattggtgccttt |
13658716 |
T |
|
| Q |
377 |
ttgacacataatgggtggaattcaactttggaaagtgtggtctgtg |
422 |
Q |
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|||||||||| ||| |||||||| |||||||| |||||||| |||| |
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| T |
13658717 |
ttgacacatagtggatggaattctactttggagagtgtggtttgtg |
13658762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 82 - 422
Target Start/End: Original strand, 13652949 - 13653289
Alignment:
| Q |
82 |
caatttcttcaaagtggatagaacctgcatggagtggcttgactctcaacaattgaaatcagttatatatgttagctttggaagcactacaccaatgaag |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || ||||||| ||||| |||||| |||||||||||||||||||||| ||| |||||| | |
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| T |
13652949 |
caatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacg |
13653048 |
T |
|
| Q |
182 |
agagaagaaataattgagatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaa |
281 |
Q |
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|||||||||||| ||||| ||||||| ||||| ||||| ||||||||| || || ||||||||||| ||||||||||||||||||||| || || ||| |
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| T |
13653049 |
agagaagaaatacttgagttttggcacggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaagactaataa |
13653148 |
T |
|
| Q |
282 |
gtgagcttgaggaagggactagtaaggaaaaagggttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcgtttttgac |
381 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| |||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13653149 |
aagaacttgaggaagggactagtaaggagaaaggtttgattgtggagtgggctccacaagaggaagttttgtcacataaggcaattggtgcttttttgac |
13653248 |
T |
|
| Q |
382 |
acataatgggtggaattcaactttggaaagtgtggtctgtg |
422 |
Q |
| |
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||||| ||| |||||||| |||||||| |||||||| |||| |
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| T |
13653249 |
acatagtggatggaattctactttggagagtgtggtttgtg |
13653289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 414
Target Start/End: Complemental strand, 26672241 - 26672162
Alignment:
| Q |
335 |
ccacaagaggaagttttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaactttggaaagtgt |
414 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| | |||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
26672241 |
ccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgt |
26672162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 414
Target Start/End: Complemental strand, 26943839 - 26943760
Alignment:
| Q |
335 |
ccacaagaggaagttttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaactttggaaagtgt |
414 |
Q |
| |
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|||||||||||||||||| |||| ||||||| | |||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
26943839 |
ccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgt |
26943760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 20156911 - 20156859
Alignment:
| Q |
350 |
ttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaac |
402 |
Q |
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||||||||||| ||||| ||||| |||||||||||| ||| ||||||||||| |
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| T |
20156911 |
ttgtcacataaagcaataggtgcatttttgacacattgtggatggaattcaac |
20156859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 27224227 - 27224168
Alignment:
| Q |
350 |
ttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaactttggaa |
409 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||| ||| ||||||||||| |||||| |
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|
| T |
27224227 |
ttgtcacataaagcaataggtgcatttttgacacattgtggttggaattcaacattggaa |
27224168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 414
Target Start/End: Original strand, 31210024 - 31210072
Alignment:
| Q |
366 |
ttggtgcgtttttgacacataatgggtggaattcaactttggaaagtgt |
414 |
Q |
| |
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||||||| |||| ||| |||||||| ||||||||||||||||| ||||| |
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| T |
31210024 |
ttggtgcattttggactcataatggttggaattcaactttggagagtgt |
31210072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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