View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_low_16 (Length: 379)
Name: NF11564_low_16
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 369
Target Start/End: Original strand, 28020684 - 28021034
Alignment:
| Q |
12 |
cactcatgatacttgtatttccaagtttgaatttcccaaattttacaaataaatgttggaatgtgtttttataagggcgaccagttccaccttcccgatg |
111 |
Q |
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| T |
28020684 |
cacttatgatacttgtatttccaagtttgaatttcccaaatttgacaaataaatgttggaatgtgattttataagggcgaccagttccaccttcccgat- |
28020782 |
T |
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| Q |
112 |
agcgatgacacaccaccaacatccatggttctcttaaccatgattcactttggggcactttttctttagacaacatgttcaagttgcatggtatgtcggg |
211 |
Q |
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| T |
28020783 |
------gacacaccaccaacatccatggttctcttaaccatgattcactttggggcactttttctttagacaacatgttcaagttgcatggtatgtcggg |
28020876 |
T |
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| Q |
212 |
ttccattacaagtgatagataccctattattttgagccaatttcggactgaattcttcaaccttcaaggggtgcccctcatcaaaacgacaacttaccac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28020877 |
ttccattacaagtgatagataccctattattttgagccaatttcggactgaattcttcaaccttcaaggggtgcccctcatcaaaacgacaacttaccac |
28020976 |
T |
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| Q |
312 |
cgtcagtccaatggacaaactaagactgctaacaaaggcttgaaaacttacctctgtg |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28020977 |
cgtcagtccaatggacaaactaagactgctaacaaaggcttgaaaacttacctctgtg |
28021034 |
T |
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