View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11564_low_18 (Length: 362)

Name: NF11564_low_18
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11564_low_18
NF11564_low_18
[»] chr2 (10 HSPs)
chr2 (4-349)||(28670519-28670864)
chr2 (1-273)||(28674739-28675011)
chr2 (1-284)||(28642001-28642284)
chr2 (1-284)||(28650862-28651145)
chr2 (1-229)||(28696144-28696372)
chr2 (1-229)||(28691259-28691487)
chr2 (279-349)||(28639653-28639723)
chr2 (279-349)||(28648960-28649030)
chr2 (40-184)||(28717507-28717651)
chr2 (280-347)||(28674425-28674492)
[»] chr4 (1 HSPs)
chr4 (26-122)||(41238469-41238565)


Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 4 - 349
Target Start/End: Complemental strand, 28670864 - 28670519
Alignment:
Q  4 agaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaacttgta 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  28670864 agaaaagttcgaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacagattttggatgagatgatcaatggaacttgta 28670765  T
Q  104 gatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttactctttaccaagacca 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  28670764 gatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatcttaccaaaaaagttgtttatctttccaattttactctctacctagacca 28670665  T
Q  204 atctgctgattggagggacacacttgcatttttctgggaacccgatcctcctaaagccgatgaactaccaccggtttgcagtgatattgttaatgaatac 303  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28670664 atctgctgattggagggacacacttgcatttttctgggcacccgatcctcctaaagccgatgaactaccaccggtttgcagtgatattgttaatgaatac 28670565  T
Q  304 acaaaagaagtaatggcacttggatcttctttgtatgagttattgt 349  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  28670564 acaaaagaagtaatggcacttggatcttctttgtacgagttattgt 28670519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 28675011 - 28674739
Alignment:
Q  1 gtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  28675011 gtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtgataaatcatggaattccaacacatattttggatgagatgatcaaaggaactt 28674912  T
Q  101 gtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttactctttaccaaga 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28674911 gtagatttcaccaacaagatgccaaggcgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctctccaattttactctttaccaaga 28674812  T
Q  201 ccaatctgctgattggagggacacacttgcatttttctgggaacccgatcctcctaaagccgatgaactacca 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||| || ||||| || |||||||||    
T  28674811 ccaatctgctgattggagggacacacttgcatttttctgggaacctcatcccccaaaagctgaagaactacca 28674739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 28642284 - 28642001
Alignment:
Q  1 gtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaactt 100  Q
    |||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||| |||||||| |||||||    
T  28642284 gtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaactt 28642185  T
Q  101 gtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttactctttaccaaga 200  Q
    |||||||||| ||||| ||| | ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||    
T  28642184 gtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccgtgatctcactaaaaaagttgtttatctttccaattttactctttccgaaga 28642085  T
Q  201 ccaatctgctgattggagggacacacttgcatttttctgggaacccgatcctcctaaagccgatgaactaccaccggtttgcag 284  Q
     ||||||||||| |||||||||||||||||||||||||||| |||  | ||||| || |  |||||||||||||| ||||||||    
T  28642084 tcaatctgctgagtggagggacacacttgcatttttctgggcacctcaccctcccaatgttgatgaactaccaccagtttgcag 28642001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 28651145 - 28650862
Alignment:
Q  1 gtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaactt 100  Q
    |||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||| ||||| |||| |||||||| |||||||    
T  28651145 gtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaattccagttcatgttttgcatgagatgatcaaaggaactt 28651046  T
Q  101 gtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttactctttaccaaga 200  Q
    |||||||||| ||||| ||| | ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||    
T  28651045 gtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccgtgatctcactaaaaaagttgtttatctttccaattttactctttccgaaga 28650946  T
Q  201 ccaatctgctgattggagggacacacttgcatttttctgggaacccgatcctcctaaagccgatgaactaccaccggtttgcag 284  Q
     ||||||||||| |||||||||||||||||||||||||||| |||  ||||||| || |  |||||||||||||| ||||||||    
T  28650945 tcaatctgctgagtggagggacacacttgcatttttctgggcacctcatcctcccaatgttgatgaactaccaccagtttgcag 28650862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 28696372 - 28696144
Alignment:
Q  1 gtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaactt 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||    
T  28696372 gtgagaaaagttcaaaatgcaagtgagaattggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgatcaaaggaactt 28696273  T
Q  101 gtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttactctttaccaaga 200  Q
    |||||||||| |||||||||||||||||||| || ||||| || ||  | |||| || ||| |||||||||||| |||| |||| || ||||||||| ||    
T  28696272 gtagatttcatcaacaagatgccaaggtgagaaaagagtattatacatgcgatcccaacaagaaagttgtttatgtttctaattatagtctttaccatga 28696173  T
Q  201 ccaatctgctgattggagggacacacttg 229  Q
     |   ||||| ||||||||||| ||||||    
T  28696172 tcctgctgctaattggagggactcacttg 28696144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 28691487 - 28691259
Alignment:
Q  1 gtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaactt 100  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || | ||| |||||||||| |||||||| |||||||    
T  28691487 gtgagaaaagttgaaaatgcatgtgagaagtggggattctttcaagtaataaatcatggaatttcagctcatgttttggatgagatgatcaaaggaactt 28691388  T
Q  101 gtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttactctttaccaaga 200  Q
    |||||||||| ||||||||||  | ||| ||||| ||||| ||||| |||||||  | ||| |||||||||||  |||| |||| || ||||||||| ||    
T  28691387 gtagatttcatcaacaagatgttatggtaaggaaagagtattacacacgtgatcctaacaagaaagttgtttacgtttctaattatagtctttaccatga 28691288  T
Q  201 ccaatctgctgattggagggacacacttg 229  Q
     |   ||||| ||||||||||| ||||||    
T  28691287 tcctgctgctaattggagggactcacttg 28691259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 28639723 - 28639653
Alignment:
Q  279 ttgcagtgatattgttaatgaatacacaaaagaagtaatggcacttggatcttctttgtatgagttattgt 349  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28639723 ttgcagtgatattgtgaatgaatacacaaaagaagtaacggcacttggatcttctttgtatgagttattgt 28639653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 28649030 - 28648960
Alignment:
Q  279 ttgcagtgatattgttaatgaatacacaaaagaagtaatggcacttggatcttctttgtatgagttattgt 349  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28649030 ttgcagtgatattgtgaatgaatacacaaaagaagtaacggcacttggatcttctttgtatgagttattgt 28648960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 184
Target Start/End: Complemental strand, 28717651 - 28717507
Alignment:
Q  40 tttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaacttgtagatttcaccaacaagatgccaaggtgaggaaggagt 139  Q
    |||||||||||||||||||||||| |||| ||| |||||||||| |||||||| ||||||||||||||||| ||||||||||  | ||| ||||| ||||    
T  28717651 tttcaagtaataaatcatggaatttcaactcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatgttagggtaaggaaagagt 28717552  T
Q  140 actacacccgtgatctcaccaaaaaagttgtttatctttccaatt 184  Q
    | ||||   ||||||  | ||| |||||||||||| |||| ||||    
T  28717551 attacatatgtgatcctaacaagaaagttgtttatatttctaatt 28717507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 28674492 - 28674425
Alignment:
Q  280 tgcagtgatattgttaatgaatacacaaaagaagtaatggcacttggatcttctttgtatgagttatt 347  Q
    |||||||||||||| | ||| ||| |||||||||||| ||| ||||| | |||||||| |||||||||    
T  28674492 tgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagttatt 28674425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 41238469 - 41238565
Alignment:
Q  26 agaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaacttgtagatttcaccaacaagatgc 122  Q
    |||| |||||||| || ||||| || |||||||| ||||||   ||| |||||||||| ||||||||||||| ||||||||||||  ||||||||||    
T  41238469 agaactggggatttttccaagtgatcaatcatggtattccacttcatgttttggatgagatgatcaatggaatttgtagatttcatgaacaagatgc 41238565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University