View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_low_19 (Length: 361)
Name: NF11564_low_19
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 92 - 351
Target Start/End: Complemental strand, 22303568 - 22303309
Alignment:
| Q |
92 |
aaatttgattctgagtattttcaaaattttgatgatcttggaaaagtgtcaaaatgttattttatttacatggatattcttatattgagaagatctacta |
191 |
Q |
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| T |
22303568 |
aaatttgattctgagtattttcaaaattttgatgatcttggaaaagtgtcaaagtgttattttatttacatggatattcttatattgagaagatctacta |
22303469 |
T |
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| Q |
192 |
atgtattgatttggnnnnnnngacaaaaaataataattttggtgtagttttcgtattagccgaaccaaaaagggtaaaatggttagtttttgtgtgtctt |
291 |
Q |
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| T |
22303468 |
atgtattgatttggtttttttgacaaaaaataataattttggtgtagttttcgtattagccgaaccaaaaagggtaaaatggttagtttttgtgtgtctt |
22303369 |
T |
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| Q |
292 |
catgctgatatgatctgatcaatggattcacctcattgaaatcttcgaaatggccctatg |
351 |
Q |
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| T |
22303368 |
catgctgatatgatctgatcaatggattcacctcattgaaatcttcgaaatggccctatg |
22303309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 22303910 - 22303843
Alignment:
| Q |
18 |
gttccaataccataagcaattcaaacaaagtcttggttgataagccatcaaatacacatttttatcac |
85 |
Q |
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| T |
22303910 |
gttccaataccataagcaattcaaacaaagtcttggttgataagccatcaaatacacatttttatcac |
22303843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 21910787 - 21910740
Alignment:
| Q |
133 |
aaaagtgtcaaaatgttattttatttacatggatattcttatattgag |
180 |
Q |
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| T |
21910787 |
aaaagcgtcaaaatgttattttatttacatggatagtctaatattgag |
21910740 |
T |
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