View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_low_21 (Length: 342)
Name: NF11564_low_21
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 323
Target Start/End: Original strand, 27295697 - 27296011
Alignment:
| Q |
9 |
gaacctgtgaaacttgtatgtttgagaatagtactccttgtactgaacctgatccaccctgcataattttttatttaatttgttagagatcaaatttttc |
108 |
Q |
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| T |
27295697 |
gaacctgtgaaacttgtatgtttgagaatagtactccttgtactgaacctgatccaccctgcataattttttatttaatttgttagagatcaaatttttc |
27295796 |
T |
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| Q |
109 |
attcaatttgatgaaggtatttggattgaatgagagctttgcagcatttgattgaatcataattatttggctttgagagaagattcaattatcggtatga |
208 |
Q |
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| T |
27295797 |
attcaatttgatgaaggtatttggattgaatgagagctttgcagcatttgattgaatcataattatttggctttgagagaagattcaattatcggtatga |
27295896 |
T |
|
| Q |
209 |
aatgattttgaagttaaattttctgataagcttgatgaacatataggaatcttttttacctgccatgttttgattctgacaccattcattgtgttatgca |
308 |
Q |
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| T |
27295897 |
aatgattttgaagttaaattttctgataagcttgatgaacatataggaatcttttttacctgccatgttttgattctgacaccattcattgtgttatgca |
27295996 |
T |
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| Q |
309 |
tgttgacatccctga |
323 |
Q |
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| T |
27295997 |
tgttgacatccctga |
27296011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 14739074 - 14739019
Alignment:
| Q |
16 |
tgaaacttgtatgtttgagaatagtactccttgtactgaacctgatccaccctgca |
71 |
Q |
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| T |
14739074 |
tgaaacttgtatgtttgagaataatactccctgtactgaaccagatccaccctgca |
14739019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 14738722 - 14738662
Alignment:
| Q |
263 |
tttacctgccatgttttgattctgacaccattcattgtgttatgcatgttgacatccctga |
323 |
Q |
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| T |
14738722 |
tttacctgccatgttttgattctaacaccattcattgagtcgtgtatgttgacatctctga |
14738662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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