View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_low_26 (Length: 269)
Name: NF11564_low_26
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 19197686 - 19197937
Alignment:
| Q |
1 |
catttcagacttattgttcatactagactgctaattgttttacagatagcatctactcatgtttttgaactttgaaaaagttatgaataagacacaaatt |
100 |
Q |
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| T |
19197686 |
catttcagacttattgttcatactagactgctaattgttttacagatagcatctactcatgttttttaactttgaaaaagttatgaataaggcacaaatt |
19197785 |
T |
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| Q |
101 |
taacaagacctagaacattatctaattttaggtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaacctaataaaga |
200 |
Q |
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| T |
19197786 |
taacaagacctagaacattatctaattttaggtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaacctaataaaga |
19197885 |
T |
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| Q |
201 |
gtgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttc |
252 |
Q |
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| T |
19197886 |
gtgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttc |
19197937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 19201666 - 19201914
Alignment:
| Q |
1 |
catttcagacttattgttcatactagactgctaattgttttacagatagca---tctactc--atgtttttgaactttgaaaaagttatgaataagacac |
95 |
Q |
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| T |
19201666 |
cattccagacttattgttcatactagacagctaattgttttgcacatagcaccatctactctcatgtttt-gaactgtgaaaaagttatgaataagacac |
19201764 |
T |
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| Q |
96 |
aaatttaacaagacctagaacattatctaattttaggtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaacctaat |
195 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| ||||| || |||||||| ||||||||| |
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| T |
19201765 |
aaatttaacaagacctagaacattatctgattttacctaaggaagcatttcatgacatgcttaaagaaagattaaatgcataagatctattaaacctaat |
19201864 |
T |
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| Q |
196 |
aaagagtgtctgagagaaacctgttgcttcattagctcgcgtttggcttt |
245 |
Q |
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||||||||||||||| |||||| |||||||||||||| |||||| ||||| |
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| T |
19201865 |
aaagagtgtctgagaaaaacctcttgcttcattagcttgcgttttgcttt |
19201914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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