View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11564_low_30 (Length: 246)
Name: NF11564_low_30
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 7741341 - 7741457
Alignment:
| Q |
114 |
gttcaccattttgtattccttgatgcctttatcatcttctacaagttactgtttttaatatcacttcttttaattaatatccaatcaatcgataaagtat |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7741341 |
gttcaccattttgtattccttggtgcctttatcatcttctacaacttactgtttttaatatcacttcttttaattaatatccaatcaatcgataaagtat |
7741440 |
T |
|
| Q |
214 |
tatttgcaaatctcttc |
230 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7741441 |
tatttgcaaatctcttc |
7741457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 7741232 - 7741313
Alignment:
| Q |
5 |
caatgagatggacatcattgataatacaatcacaactttgcccctaccttttatatttcatcatctgctcctcattctctcg |
86 |
Q |
| |
|
|||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7741232 |
caatgaaatggaaaacattgataatacaatcacaactttgcccctaccttttatatttcatcatctgcttctcattctctcg |
7741313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 36657510 - 36657395
Alignment:
| Q |
115 |
ttcaccattttgtattccttgatgcctttatcatcttctacaagttactg-tttttaatatcacttcttttaattaatatccaatcaatcgataaagtat |
213 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||| ||| || ||||||||| ||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
36657510 |
ttcaccgttttgtattccttggtgcctttatcatcttctacaacttattgttttttaataccacttcttttaattaatat-caatcaaccgataaagtat |
36657412 |
T |
|
| Q |
214 |
tatttgcaaatctcttc |
230 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
36657411 |
tatttgcaaatctcttc |
36657395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 36657589 - 36657533
Alignment:
| Q |
21 |
attgataatacaatcacaactttgcccctaccttttatatttcatcatctgctcctc |
77 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
36657589 |
attgttaatacaatcacaattttgcccctaccttttctatttcatcatttgctcctc |
36657533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University