View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_low_33 (Length: 227)
Name: NF11564_low_33
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 30026210 - 30026403
Alignment:
| Q |
15 |
atgaaccggagtatcaaggatcgtgttgatgggaatgattgacaacttttctgcctatattctatgctttccaccaatattattaagattaatttggctg |
114 |
Q |
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| T |
30026210 |
atgaaccagagtatcaaggatcgtgttgatgggaatgattgacaactttccttcctatattctatgctttccaccaatattattaagattaatttggctg |
30026309 |
T |
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| Q |
115 |
ctc-tttttcttgtgcatgacattcgaaggttgccagtggttaatagaatctcatacttcgttgctcggaaaagaaagttggaattggatttgg |
207 |
Q |
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| T |
30026310 |
ctcttttttcttgtgcatgacattcgaaggctaccagtggttaatagaatctcatacttcgttgctcagaaaagaaagttggaattggatttgg |
30026403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 28426991 - 28427111
Alignment:
| Q |
15 |
atgaaccggagtatcaaggatcgtgttgatgggaatgattgacaacttttctgcctatattctatgctttccaccaa---tattattaagattaatttgg |
111 |
Q |
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| T |
28426991 |
atgaactggagtatcaaggaccttgttgatgggaatgattggaaactttctcgcctatattcaatacttcccaccaacattattaataagattaatttgg |
28427090 |
T |
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| Q |
112 |
ctgctctttttcttgtgcatg |
132 |
Q |
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| T |
28427091 |
ctcctcattttcttgtgcatg |
28427111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 42469780 - 42469900
Alignment:
| Q |
15 |
atgaaccggagtatcaaggatcgtgttgatgggaatgattgacaacttttctgcctatattctatgctttccaccaa---tattattaagattaatttgg |
111 |
Q |
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| T |
42469780 |
atgaactggagtatcaaggaccttgttgatgggaatgattgaaaactttctcgctaatattccatacttcccaccaacattattaataagattaattcgg |
42469879 |
T |
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| Q |
112 |
ctgctctttttcttgtgcatg |
132 |
Q |
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|| ||| ||||||| |||||| |
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| T |
42469880 |
ctcctcattttcttatgcatg |
42469900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 42469965 - 42470025
Alignment:
| Q |
147 |
ccagtggttaatagaatctcatacttcgttgctcggaaaagaaagttggaattggatttgg |
207 |
Q |
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| T |
42469965 |
ccagtggttaatgggagctcagacttcattgcttggggaagaaagttggaattggatttgg |
42470025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 39169363 - 39169483
Alignment:
| Q |
15 |
atgaaccggagtatcaaggatcgtgttgatgggaatgattgacaacttttctgcctatattctatgctttccaccaa---tattattaagattaatttgg |
111 |
Q |
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| T |
39169363 |
atgaactggagtatcaaggaccttgttgatggaaatgatcggaaactttctcgcctatattccatacttcccaccaacattattaataagattaattcgg |
39169462 |
T |
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| Q |
112 |
ctgctctttttcttgtgcatg |
132 |
Q |
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|| ||| |||||||||||||| |
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| T |
39169463 |
ctcctcattttcttgtgcatg |
39169483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 17161096 - 17161152
Alignment:
| Q |
151 |
tggttaatagaatctcatacttcgttgctcggaaaagaaagttggaattggatttgg |
207 |
Q |
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|||||||| | | |||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
17161096 |
tggttaatgggagctcatacttcattgctcggggaagaaagttggaattggatttgg |
17161152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 17160915 - 17161030
Alignment:
| Q |
22 |
ggagtatcaaggatcgtgttgatgggaatgattgacaacttttctgcctatattctatgctttccac---caatattattaagattaatttggctgctct |
118 |
Q |
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|||||||||||||| ||||||||| |||||||| |||||| |||||||||| || ||| |||| || ||||| |||||||||||||||| ||| |
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| T |
17160915 |
ggagtatcaaggatgttgttgatggaaatgattggaaactttatcgcctatattccatacttaccaccggcattattaataagattaatttggctcctc- |
17161013 |
T |
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| Q |
119 |
ttttcttgtgcatgaca |
135 |
Q |
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|||||| ||||||||| |
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| T |
17161014 |
atttcttatgcatgaca |
17161030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 39169548 - 39169608
Alignment:
| Q |
147 |
ccagtggttaatagaatctcatacttcgttgctcggaaaagaaagttggaattggatttgg |
207 |
Q |
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|||||||||||||| | |||| ||||| ||||| || |||||||||||||||||| |||| |
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| T |
39169548 |
ccagtggttaataggagctcagacttcattgcttggggaagaaagttggaattggaattgg |
39169608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 6931887 - 6931775
Alignment:
| Q |
22 |
ggagtatcaaggatcgtgttgatgggaatgattgacaacttttctgcctatattctatgctttccaccaatattatt--aagattaatttggctgctctt |
119 |
Q |
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||||||||||||| | |||||||||||||||| | |||||| |||||||||| || ||| ||| ||| |||||| |||||||||| |||| ||| | |
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| T |
6931887 |
ggagtatcaaggaccttgttgatgggaatgatcggaaactttctcgcctatattccatacttcccatcaacattattaaaagattaattcggctcctcat |
6931788 |
T |
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| Q |
120 |
tttcttgtgcatg |
132 |
Q |
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||||||||||||| |
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| T |
6931787 |
tttcttgtgcatg |
6931775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 6931710 - 6931650
Alignment:
| Q |
147 |
ccagtggttaatagaatctcatacttcgttgctcggaaaagaaagttggaattggatttgg |
207 |
Q |
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|||||||||||| | | |||| ||||| ||||| || ||||||||||||||||||||||| |
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| T |
6931710 |
ccagtggttaatgggagctcagacttcattgcttggggaagaaagttggaattggatttgg |
6931650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 34339878 - 34339820
Alignment:
| Q |
147 |
ccagtggttaatagaatctcatacttcgttgctcggaaaagaaagttggaattggattt |
205 |
Q |
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|||||||||||| | | | ||||||||||||||||| |||||||||||||||| |||| |
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| T |
34339878 |
ccagtggttaatgggagcccatacttcgttgctcggggaagaaagttggaattgaattt |
34339820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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