View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11564_low_35 (Length: 211)
Name: NF11564_low_35
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_low_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 109527 - 109641
Alignment:
| Q |
42 |
tgctgtaaaatatgtaaatttgtgtgtcgataatgaaatcatatatacaccttgtatttataatggttttcctggaaatgtattaaatgtttaaggaata |
141 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
109527 |
tgctgcaaaatatgtaaatttgtgtgtcgataatgaaatcaca----ccccttgtatttataatggtattactgtaaatgtattaaatgtttaaggaata |
109622 |
T |
|
| Q |
142 |
agcactagcttagaaagtt |
160 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
109623 |
agcactagcttagaaagtt |
109641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 189
Target Start/End: Original strand, 109656 - 109685
Alignment:
| Q |
160 |
taataacaatcaatctagaaagttgtacaa |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
109656 |
taataacaatcaatctagaaagttgtacaa |
109685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 28767453 - 28767525
Alignment:
| Q |
88 |
acaccttgtatttataatggttttcctggaaatgtattaaatgtttaaggaataagcactagcttagaaagtt |
160 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||| |||| |||| || ||||||||||| ||| ||||| |
|
|
| T |
28767453 |
acaccctgtatttataatggttttacaataaatgtattgaatgcttaatgagtaagcactagcctaggaagtt |
28767525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 23221108 - 23221036
Alignment:
| Q |
88 |
acaccttgtatttataatggttttcctggaaatgtattaaatgtttaaggaataagcactagcttagaaagtt |
160 |
Q |
| |
|
|||||||||||||||||||||||||| | || || ||| |||| |||| | ||||||||||| ||| ||||| |
|
|
| T |
23221108 |
acaccttgtatttataatggttttcccgtaagtgcattgaatgcttaattagtaagcactagcataggaagtt |
23221036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University