View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_low_36 (Length: 208)
Name: NF11564_low_36
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 27676219 - 27676338
Alignment:
| Q |
10 |
tgagcattattattttttgaaataacgccaacaataaaaatagcataagatgctttcatcaagaaaatccatgcaggaatcccatag-aaaaaataatcc |
108 |
Q |
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| T |
27676219 |
tgagcattattattttttgaaataacgccaacaataaaaatagcataagatgctttcatcaagaaaatccatgcaggaatcccctagaaaaaaataatcc |
27676318 |
T |
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| Q |
109 |
tttcaaagtaaatacatcat |
128 |
Q |
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| T |
27676319 |
tttcaaagtaaatacatcat |
27676338 |
T |
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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 27676420 - 27676486
Alignment:
| Q |
142 |
gtaaaataaatcatgacatattaacctatatgttaagtttataacacaagttagtgatatatagcaa |
208 |
Q |
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| T |
27676420 |
gtaaaataaatcatgacatattaacctatatgttaagtttataacacaagttagtgatatatagcaa |
27676486 |
T |
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