View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11564_low_5 (Length: 653)
Name: NF11564_low_5
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 564; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 23 - 643
Target Start/End: Original strand, 37030141 - 37030762
Alignment:
| Q |
23 |
tcaccaccattagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatca |
122 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030141 |
tcacccccattagtccaaatactaatcttaggctcaagtcctcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatca |
37030240 |
T |
|
| Q |
123 |
agtaatccctcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaattccctctgcctc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030241 |
agtaatccctcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaattccctctgcctc |
37030340 |
T |
|
| Q |
223 |
ctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttcttctca |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030341 |
ctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttcttctca |
37030440 |
T |
|
| Q |
323 |
tacagaattgcttctgcctctttctgttttttgtacagctcccagtttgcttcttgcacctacaccatccaaagttttaatcaccaaaaacttaaattat |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030441 |
tacagaattgcttctgcctctttctgttttttgtacagctcccagtttgcttcttgcacctacaccatccaaagttttaatcaccaaaaacttaaattat |
37030540 |
T |
|
| Q |
423 |
tgtaatttattttcctatcaacagctattaattatttaatttca--gcaaataaaaaatgaatcaagttatatatatttgcatggactaaactaaccttg |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | | || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030541 |
attaatttattttcctatcaacagctattaatatattaatcttattgc-tataaaaaatgaatcaagttatatatatttgcatggactaaactaaccttg |
37030639 |
T |
|
| Q |
521 |
gtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagctt |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030640 |
gtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagctt |
37030739 |
T |
|
| Q |
621 |
cccttagtttcacagccttcttc |
643 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37030740 |
cccttagtttcacagccttcttc |
37030762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 29 - 395
Target Start/End: Complemental strand, 32593593 - 32593227
Alignment:
| Q |
29 |
ccattagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaat |
128 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||| |||||| || || |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32593593 |
ccattagtccaaatactaatcttaggttcaagtccatgtactgcctcagcattgatcttagccatctcttgaaacatgccaccatttatcatcaagtaat |
32593494 |
T |
|
| Q |
129 |
ccctcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaattccctctgcctccttttt |
228 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| | |||| ||||||||| || |||||||| ||||| |
|
|
| T |
32593493 |
cccttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcattcccaagtgtcacaatcccttctgcctctttttt |
32593394 |
T |
|
| Q |
229 |
ctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttcttctcatacaga |
328 |
Q |
| |
|
|||||| || |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32593393 |
ctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctgcctctgccttcttctcatacaga |
32593294 |
T |
|
| Q |
329 |
attgcttctgcctctttctgttttttgtacagctcccagtttgcttcttgcacctacaccatccaaa |
395 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| | |||||||| || ||||| ||||| |||||||||| |
|
|
| T |
32593293 |
attgcttctgattctttttgtttcttgtataattcccagttagcctcttgtacctaaaccatccaaa |
32593227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 29 - 378
Target Start/End: Original strand, 51823698 - 51824047
Alignment:
| Q |
29 |
ccattagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaat |
128 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51823698 |
ccattagtccaaatactaatcttaggttcaagtccacgtactgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaat |
51823797 |
T |
|
| Q |
129 |
ccctcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaattccctctgcctccttttt |
228 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||| | ||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
51823798 |
cccttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacgctccttgagcatttccaagtgtcacaatcccctctgcctctttttt |
51823897 |
T |
|
| Q |
229 |
ctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttcttctcatacaga |
328 |
Q |
| |
|
|||||| || || ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51823898 |
ctttgcgtatagatctgcttcagctgcttgcttgcacgcataaaatgttgcatctgccaatgctttctgtgcttctgcctctgccttcttctcgtacaga |
51823997 |
T |
|
| Q |
329 |
attgcttctgcctctttctgttttttgtacagctcccagtttgcttcttg |
378 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| | |||||||| || ||||| |
|
|
| T |
51823998 |
attgcttctgcttctttttgtttcttgtataattcccagttagcctcttg |
51824047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 23 - 384
Target Start/End: Original strand, 31526802 - 31527163
Alignment:
| Q |
23 |
tcaccaccattagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatca |
122 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| |||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31526802 |
tcacctccattagtccaaatactaatcttaggttcaagtccacgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatca |
31526901 |
T |
|
| Q |
123 |
agtaatccctcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaattccctctgcctc |
222 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| | |||| ||||||||| ||||||||||| |
|
|
| T |
31526902 |
agtaatcccttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcattcccaagtgtcacaatcccctctgcctc |
31527001 |
T |
|
| Q |
223 |
ctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttcttctca |
322 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527002 |
ttttttctttgcatatagctccgcttcggctgcttgcttgcgcgcataaaatgttgcatctgacaatgctttctgtgcttctgcctctgccttcttctca |
31527101 |
T |
|
| Q |
323 |
tacagaattgcttctgcctctttctgttttttgtacagctcccagtttgcttcttgcaccta |
384 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||| | |||||||| || ||||| ||||| |
|
|
| T |
31527102 |
tacagaattgcttctgcttctttttgtttcctgtataattcccagttagcctcttgtaccta |
31527163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 511 - 627
Target Start/End: Complemental strand, 32592694 - 32592578
Alignment:
| Q |
511 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
610 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| || |
|
|
| T |
32592694 |
actaaccttggtttcatactgaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc |
32592595 |
T |
|
| Q |
611 |
aactcagcttcccttag |
627 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32592594 |
aactcagcttcccttag |
32592578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 511 - 627
Target Start/End: Original strand, 31527272 - 31527388
Alignment:
| Q |
511 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
610 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| || |
|
|
| T |
31527272 |
actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc |
31527371 |
T |
|
| Q |
611 |
aactcagcttcccttag |
627 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
31527372 |
aactcagcttcccttag |
31527388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 493 - 574
Target Start/End: Original strand, 51824272 - 51824353
Alignment:
| Q |
493 |
tatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagta |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||| |
|
|
| T |
51824272 |
tatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagta |
51824353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 579 - 627
Target Start/End: Original strand, 51824717 - 51824765
Alignment:
| Q |
579 |
tcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttag |
627 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||| ||||||||||||||||| |
|
|
| T |
51824717 |
tcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttag |
51824765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 49186991 - 49187384
Alignment:
| Q |
19 |
attatcaccaccattagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49186991 |
attatcaccaccattagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcattaatcttagcaatctcttgaaacatgtcaccatttatc |
49187090 |
T |
|
| Q |
119 |
atcaagtaatccctcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaattccctctg |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||| ||||||||||||||||| |
|
|
| T |
49187091 |
atcaagtaatcccttacagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacgctccttgagcttgtccaagtgtcacaattccctctg |
49187190 |
T |
|
| Q |
219 |
cctcctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttctt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49187191 |
cctcctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgacgctttctgtgcttctgcctctgccttctt |
49187290 |
T |
|
| Q |
319 |
ctcatacagaattgcttctgcctctttctgttttttgtacagctcccagtttgcttcttgcacctacaccatccaaagttttaatcaccaaaaa |
412 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49187291 |
ctcatacagaattgcttcagtctctttctgtttcttgtacagctcccagtttgcttcttgtacctacaccatccaaagttttaatcaccaaaaa |
49187384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 21 - 412
Target Start/End: Original strand, 49201973 - 49202364
Alignment:
| Q |
21 |
tatcaccaccattagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcat |
120 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49201973 |
tatcactaccattagtccaaatactaatcttaggctcaagtccgcgtactgcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcat |
49202072 |
T |
|
| Q |
121 |
caagtaatccctcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaattccctctgcc |
220 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||| |||||| ||||||||||| | |||||||| | |||| ||||||||| ||||||||| |
|
|
| T |
49202073 |
caagtaatcccttacagctgtgtagttgtttccaagtgcattcagaagtgtacttacatacgctccttgagcattcccaagtgtcacaatcccctctgcc |
49202172 |
T |
|
| Q |
221 |
tcctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttcttct |
320 |
Q |
| |
|
|| ||||||||||| || ||||||||||| ||| |||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
49202173 |
tcttttttctttgcgtatagctctgcttcggcttcttgcttgcaagcataaaatgttgcatctgctgacgctttctgtgcttctgcctctgccttcttct |
49202272 |
T |
|
| Q |
321 |
catacagaattgcttctgcctctttctgttttttgtacagctcccagtttgcttcttgcacctacaccatccaaagttttaatcaccaaaaa |
412 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |||| |
|
|
| T |
49202273 |
catacagaattgcttcagcctctttctgcttcttgtacagctcccagtttgcttcttgtacctacaccatccagagtttgaatcaccgaaaa |
49202364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 49190682 - 49191075
Alignment:
| Q |
19 |
attatcaccaccattagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
49190682 |
attatcaccaccattagtccaaatactaatcttaggctcaagtccgcgtactgcctcagcattaatcttagcgatctcttgaaacatgccaccatttatc |
49190781 |
T |
|
| Q |
119 |
atcaagtaatccctcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaattccctctg |
218 |
Q |
| |
|
|||||| ||||||| ||||| ||||||| ||||||||||||||| |||||| ||||| ||||||||||||||| | |||| ||||||||||||||||| |
|
|
| T |
49190782 |
atcaagaaatcccttacagcagtgtagttgtttccaagtgcattgagaagtgcacttagatacaccccttgagcattcccaagtgtcacaattccctctg |
49190881 |
T |
|
| Q |
219 |
cctcctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttctt |
318 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49190882 |
cctcctttttctttgcatatagctctgcttcagctgcttgcgtgcgagcataaaatgttgcgtctgctaatgctttctgtgcttctgcctctgccttctt |
49190981 |
T |
|
| Q |
319 |
ctcatacagaattgcttctgcctctttctgttttttgtacagctcccagtttgcttcttgcacctacaccatccaaagttttaatcaccaaaaa |
412 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||| |||||||| | ||| |||||||||||| |
|
|
| T |
49190982 |
ctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtacctataccatccagaatttcaatcaccaaaaa |
49191075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 49206926 - 49207300
Alignment:
| Q |
19 |
attatcaccaccattagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49206926 |
attatcaccaccattagtccaaatactaatcttaggctcaagtccgcgtaccgcctcggcattaatcttagcaatctcttgaaacatgccaccatttatc |
49207025 |
T |
|
| Q |
119 |
atcaagtaatccctcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaattccctctg |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||| |||||| ||||||||||| | |||||||| | |||| ||||| ||| ||||||| |
|
|
| T |
49207026 |
atcaagtaatcccttacagctgtgtagttgtttccaagtgcattgagaagtgtacttacatacgctccttgagcattcccaagtgtcataatcccctctg |
49207125 |
T |
|
| Q |
219 |
cctcctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttctt |
318 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||| |||| |||| |||||||||||| | ||||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
49207126 |
cctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttctt |
49207225 |
T |
|
| Q |
319 |
ctcatacagaattgcttctgcctctttctgttttttgtacagctcccagtttgcttcttgcacctacaccatcca |
393 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| ||||| | |||||||| || ||||| ||||| | |||||| |
|
|
| T |
49207226 |
ctcatacagaattgcttcagcctctttttgtttcttgtataattcccagttagcctcttgtacctagagcatcca |
49207300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 49211500 - 49211874
Alignment:
| Q |
19 |
attatcaccaccattagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49211500 |
attatcaccaccattagtccaaatactaatcttaggctcaagtccgcgtaccgcctcagcattaatcttagcaatctcttgaaacatgccaccatttatc |
49211599 |
T |
|
| Q |
119 |
atcaagtaatccctcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaattccctctg |
218 |
Q |
| |
|
|||||||||||||| || ||||| |||| ||||||||||||||| |||||| ||||||||||| | |||||||| | |||| ||||||||| ||||||| |
|
|
| T |
49211600 |
atcaagtaatcccttactgctgtatagttgtttccaagtgcattcagaagtgtacttacatacgctccttgagcattcccaagtgtcacaatcccctctg |
49211699 |
T |
|
| Q |
219 |
cctcctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttctt |
318 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||| |||| |||| |||||||||||| | ||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
49211700 |
cctcttttttctttgcgtacagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgtgcttctgcctctgccttctt |
49211799 |
T |
|
| Q |
319 |
ctcatacagaattgcttctgcctctttctgttttttgtacagctcccagtttgcttcttgcacctacaccatcca |
393 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||| ||||| | |||||||| || ||||| ||||||| |||||| |
|
|
| T |
49211800 |
ctcaaacagaattgcttctgcctccttttgtttcttgtataattcccagttagcctcttgtacctacagcatcca |
49211874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 453 - 627
Target Start/End: Original strand, 49188058 - 49188235
Alignment:
| Q |
453 |
attatttaatttcagcaaataaaaaatgaatcaagttatatatat--ttgcat-ggactaaactaaccttggtttcatattgaacactagctttgctaag |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49188058 |
attatttaatttcagcaaataaaaaatgaatgaagttatatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctaag |
49188157 |
T |
|
| Q |
550 |
gaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttag |
627 |
Q |
| |
|
|| || ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
49188158 |
taaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttag |
49188235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 488 - 627
Target Start/End: Original strand, 49191832 - 49191971
Alignment:
| Q |
488 |
ttatatatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcat |
587 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||| |
|
|
| T |
49191832 |
ttatatatatttgcatgtactaaactaaccttggtttcatattgaacactagctttgctaaggaactcagctttaagcttctcagttgtagtcaaagcat |
49191931 |
T |
|
| Q |
588 |
tcatcctctcaacttcaccttgtaactcagcttcccttag |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49191932 |
tcatcctctcaacttcaccttgtaactcagcatcccttag |
49191971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 492 - 627
Target Start/End: Original strand, 49202944 - 49203077
Alignment:
| Q |
492 |
atatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcat |
591 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
49202944 |
atatatttgcat--attaaactaaccttagtttcatattgaacactagctttgctaaggaactcggctttaagcttctcagtagtagtcaaagcattcat |
49203041 |
T |
|
| Q |
592 |
cctctcaacttcaccttgtaactcagcttcccttag |
627 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
49203042 |
cctttcaacttcaccttgtaactcagcatcccttag |
49203077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 511 - 627
Target Start/End: Original strand, 49208132 - 49208248
Alignment:
| Q |
511 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
610 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
49208132 |
actaaccttagtgtcatattcaacactagctttgctaaggaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgc |
49208231 |
T |
|
| Q |
611 |
aactcagcttcccttag |
627 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
49208232 |
aactcagcttcccttag |
49208248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 511 - 643
Target Start/End: Original strand, 49212972 - 49213104
Alignment:
| Q |
511 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
610 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || || ||||||||||| ||||| |||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
49212972 |
actaaccttagtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagttgtagtcaaagcattcatcttctcaacctcaccttgc |
49213071 |
T |
|
| Q |
611 |
aactcagcttcccttagtttcacagccttcttc |
643 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
49213072 |
aactcagcttcccttagagccacagccttcttc |
49213104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 27 - 411
Target Start/End: Original strand, 26755977 - 26756361
Alignment:
| Q |
27 |
caccattagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagta |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||| ||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
26755977 |
caccattagtccaaatactaatcttaggttcaagtccgcgtatagcctcagcattaatcttcgcaatatctcgaaacatgccaccatttatcatcaagta |
26756076 |
T |
|
| Q |
127 |
atccctcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaattccctctgcctccttt |
226 |
Q |
| |
|
||||| |||||||| || || ||||||||| || ||||| |||||||| ||||||||||| | | |||| |||||| || ||||| |||||||| |
|
|
| T |
26756077 |
gtcccttacagctgtataatcacctccaagtgcgttgagaagggtacttacacacaccccttgaccattcccaagtgtcacgatcccctccgcctccttc |
26756176 |
T |
|
| Q |
227 |
ttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttcttctcataca |
326 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| | ||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
26756177 |
ttctttgcatatagctctgcttcggctgcttgtttacgagcataaaatgttgcatttgccaatgctatctgtgcttctgcctctgtcttcttctcataca |
26756276 |
T |
|
| Q |
327 |
gaattgcttctgcctctttctgttttttgtacagctcccagtttgcttcttgcacctacaccatccaaagttttaatcaccaaaa |
411 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||| ||| ||||| | ||| ||||||||||| |
|
|
| T |
26756277 |
gaattgcttctgcctctttttgtttcttgtacagctcccagtttgcctcttgtgcctgcactatccagaatttgaatcaccaaaa |
26756361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 511 - 624
Target Start/End: Original strand, 26756496 - 26756611
Alignment:
| Q |
511 |
actaaccttggtttcatattgaacactagctttgctaa---ggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcacct |
607 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| |||| ||||||| | ||||||||| ||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
26756496 |
actaaccttggtttcatat-gtacactagctttactaattaggaactcaggtttaagcttctcagtggtagtcaaagcattcatcctctcaacctcacct |
26756594 |
T |
|
| Q |
608 |
tgtaactcagcttccct |
624 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
26756595 |
tgcaactcagcttccct |
26756611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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