View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_low_6 (Length: 593)
Name: NF11564_low_6
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 255 - 586
Target Start/End: Complemental strand, 38611569 - 38611243
Alignment:
| Q |
255 |
gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcggccaagcacatcattaaaagttaatactactatactactcaatctgaataa |
354 |
Q |
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| T |
38611569 |
gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcagccaagcacatcattaaaagttaatactacta-----ctcaatctgaataa |
38611475 |
T |
|
| Q |
355 |
acttgctgtcttttttggatggtgttgaataatttactttaaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatga |
454 |
Q |
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| T |
38611474 |
acttgctgtcttttttggatggtgttgaataatttactttaaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatga |
38611375 |
T |
|
| Q |
455 |
caactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatacctttt |
554 |
Q |
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| T |
38611374 |
caactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatacctttt |
38611275 |
T |
|
| Q |
555 |
ttctacttttgcagttcatcacaggttctgct |
586 |
Q |
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| T |
38611274 |
ttttacttttgcagttcatcacagtttctgct |
38611243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 38611843 - 38611715
Alignment:
| Q |
68 |
acgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtctacatcaaggagttctaaatcagattcaaacagttcat |
167 |
Q |
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| T |
38611843 |
acgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtctacatcaaggagttctaaatcagattcaaacagttcat |
38611744 |
T |
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| Q |
168 |
cttcaattagggatattagcaaaacattt |
196 |
Q |
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| T |
38611743 |
catcaattagggatattagcaaaacattt |
38611715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 395 - 549
Target Start/End: Complemental strand, 34726741 - 34726587
Alignment:
| Q |
395 |
aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc |
494 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||| ||||||| |||| | |||||||||||||| |
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| T |
34726741 |
aaatgctgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacaactttcaaatcacaatgcaaggcgccgtaaatatcatc |
34726642 |
T |
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| Q |
495 |
ctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatac |
549 |
Q |
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| || ||||||||||||| ||||| |||||||||| |||| | |||||||||| |
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| T |
34726641 |
gtcaagctgtccaatcaagccaatcggctttgtcttattcacgcagtggtaatac |
34726587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 395 - 549
Target Start/End: Complemental strand, 34721613 - 34721459
Alignment:
| Q |
395 |
aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc |
494 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||| ||||||| |||||| |||| | |||||| || || |
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| T |
34721613 |
aaatactgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctc |
34721514 |
T |
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| Q |
495 |
ctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatac |
549 |
Q |
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| T |
34721513 |
gtaaaactgcccaatcaagtcaatcagctttgtcttcgtcaccctgtggtaatac |
34721459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 398 - 531
Target Start/End: Complemental strand, 34730952 - 34730819
Alignment:
| Q |
398 |
tgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctg |
497 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| | ||||| |||| |||| |
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| T |
34730952 |
tgctgaaggttccacaatctggctgagttcgatgaaaagaaaagaagctgcagagaacaactttcacgtcacaatgcaaggcgacgtaagcatcagcctg |
34730853 |
T |
|
| Q |
498 |
aatctgtccaatcaagtcaatcagctttgtcttc |
531 |
Q |
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|| | |||||||||||||||||| ||||||||| |
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| T |
34730852 |
aagcactccaatcaagtcaatcagttttgtcttc |
34730819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 34726843 - 34726770
Alignment:
| Q |
308 |
agcacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttggatggtgttgaataa |
386 |
Q |
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|||||||||||||||||||||| || || |||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
34726843 |
agcacatcattaaaagttaatattaata-----ctcaatctgattcaacttgctgtcttttttggatggtgttgaataa |
34726770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 34722229 - 34722165
Alignment:
| Q |
128 |
tctacatcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaac |
192 |
Q |
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| T |
34722229 |
tctacatcagggagttcgaaatcagattcaatcagttcatcaccaactagggatattagcaaaac |
34722165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 34730996 - 34730951
Alignment:
| Q |
336 |
tactactcaatctgaataaacttgctgtcttttttggatggtgttg |
381 |
Q |
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| T |
34730996 |
tactactcagtctgattaaacttgctgtcttttttgaatggtgttg |
34730951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 34721713 - 34721655
Alignment:
| Q |
310 |
cacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttgga |
373 |
Q |
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|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
34721713 |
cacatcattaaaagttaata-----ttactactcaatctgattcaacttgctgtcttttttgga |
34721655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 34731519 - 34731457
Alignment:
| Q |
132 |
catcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaacat |
194 |
Q |
| |
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||||||||||||| ||||||| |||||| |||||||| | || |||| ||| ||||||||||| |
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| T |
34731519 |
catcaaggagttcaaaatcagcttcaaatagttcatcgttaaataggaataatagcaaaacat |
34731457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 38611891 - 38611863
Alignment:
| Q |
20 |
aaacaaaaacattgagatatccacagcca |
48 |
Q |
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| T |
38611891 |
aaacaaaaacattgagatatccacagcca |
38611863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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