View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11564_low_7 (Length: 516)
Name: NF11564_low_7
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11564_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 20 - 508
Target Start/End: Original strand, 43636593 - 43637081
Alignment:
| Q |
20 |
ttcataaaatattgtttggcctatagcgcatgggtaaatgtaccaaatcatggttcagaataaatactcaaccactgacaaccttgaagaacaaggccaa |
119 |
Q |
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| T |
43636593 |
ttcataaaatattgtttggcctatagtgcatgggtaaatgtaccaaatcatggttcagaataaatactcaaccactgacaaccttgaagaacaaggccaa |
43636692 |
T |
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| Q |
120 |
gggacatggagcattaccatgctatcatcataatcaaatttcacagcttctccgtcaatcatacaacttaccggcttctcggatacaaacaccctcattt |
219 |
Q |
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| T |
43636693 |
gggacatggagcattaccatgctatcatcataatcaaatttcacagcttctccgtcaatcatacaacttaccggcttctcggatacaaacaccctcattt |
43636792 |
T |
|
| Q |
220 |
ctccatgacccctcaccccaatttgcaccgaatctttctcttcatcaaactccaatgacataattgaacctccggagttgagcatgttaaccaatccaat |
319 |
Q |
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| T |
43636793 |
ctccatgacccctcaccccaatttgcaccgaatctttctcttcatcaaactccaatgacataattgaacctccggagttgagcatgttaactaatccaat |
43636892 |
T |
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| Q |
320 |
tggagcaaattgaattgaattttttggtatgaccatcacaggagaaactgtcatgagctcaaaactaaaaggttcaagtgaaacttctatagtctcggtg |
419 |
Q |
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| T |
43636893 |
tggagcaaattgaattgaattttttggtatgaccatcacaggagaaactgtcatgagctcaaaactaaaaggttcaagtgaaacttctatagtctcggtg |
43636992 |
T |
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| Q |
420 |
catttaagcagcttcaatttttcatctttaaacatgtatacagcaaatacatcaacacctttgatgcaaattgggtttttccctttgct |
508 |
Q |
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| T |
43636993 |
catttaagcagcttcaatttttcatctttaaacatgtagacagcaaatacatcaacacctttgatgcaaattgggttgttccctttgct |
43637081 |
T |
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