View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11564_low_8 (Length: 492)

Name: NF11564_low_8
Description: NF11564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11564_low_8
NF11564_low_8
[»] chr2 (3 HSPs)
chr2 (16-260)||(41985113-41985357)
chr2 (248-420)||(41985768-41985940)
chr2 (421-474)||(41222010-41222063)
[»] chr7 (2 HSPs)
chr7 (193-420)||(46756270-46756497)
chr7 (263-326)||(48911107-48911170)
[»] chr1 (4 HSPs)
chr1 (16-196)||(43016789-43016969)
chr1 (373-425)||(11469076-11469128)
chr1 (373-412)||(14924682-14924721)
chr1 (374-406)||(50950897-50950929)
[»] chr6 (2 HSPs)
chr6 (193-378)||(26471436-26471622)
chr6 (372-412)||(24125980-24126020)
[»] chr3 (2 HSPs)
chr3 (373-421)||(38337478-38337526)
chr3 (380-420)||(42108370-42108410)
[»] chr8 (4 HSPs)
chr8 (380-420)||(12349967-12350007)
chr8 (380-420)||(43925026-43925066)
chr8 (374-421)||(12350656-12350703)
chr8 (373-412)||(43924498-43924537)
[»] chr4 (3 HSPs)
chr4 (372-420)||(6246784-6246832)
chr4 (352-396)||(1013348-1013392)
chr4 (372-412)||(47377598-47377638)
[»] scaffold0189 (2 HSPs)
scaffold0189 (380-420)||(12184-12224)
scaffold0189 (372-420)||(12859-12907)
[»] chr5 (1 HSPs)
chr5 (374-406)||(42651581-42651613)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 41985113 - 41985357
Alignment:
Q  16 tatttcataccagcaggaggctgaataacctttgctacaagcggaagcactttactaacagcctggtatgactttgcaatcgggcaattcccattttgca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985113 tatttcataccagcaggaggctgaataacctttgctacaagcggaagcactttactaacagcctggtatgactttgcaatcgggcaattcccattttgca 41985212  T
Q  116 gccagtcattgcctgcctcatgcttcgaaccatcctgaatatcaattaaacgaaacacgtcagagacactgaaaaagtattttaatcgattttaattgat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985213 gccagtcattgcctgcctcatgcttcgaaccatcctgaatatcaattaaacgaaacacgtcagagacactgaaaaagtattttaatcgattttaattgat 41985312  T
Q  216 ttagttagaaattagttttgaaactagctctgaataatcaatttc 260  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  41985313 ttagttagaaatcagttttgaaactagctctaaataatcaatttc 41985357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 248 - 420
Target Start/End: Original strand, 41985768 - 41985940
Alignment:
Q  248 aataatcaatttcaatctcatggggttgaagataatgaggttgaagacaatatgaaataaatatatgatgtaggtagactatgataagatcagtgttcct 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  41985768 aataatcaatttcaatctcatggggttgaagataatgaggttgaagacaatatgaaataaatatatggtgtaggtagactatgataagatcagtgttctt 41985867  T
Q  348 ataaaatctaatggtaaaaagtccactttcctatggtgggaaacaacttccccttcccaaattaaccgccacc 420  Q
    ||||||| ||||||||||||||||||||||  ||||||| |||||||||||| |||||||||||| |||||||    
T  41985868 ataaaatttaatggtaaaaagtccactttctcatggtggaaaacaacttccctttcccaaattaaacgccacc 41985940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 474
Target Start/End: Complemental strand, 41222063 - 41222010
Alignment:
Q  421 tctatccagataagcgtgcacaatgtggaatgttcctgataggctcttgtcctt 474  Q
    |||||||| ||||||| |||||||||||||||| |||||||| |||||||||||    
T  41222063 tctatccatataagcgcgcacaatgtggaatgtacctgatagactcttgtcctt 41222010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 193 - 420
Target Start/End: Complemental strand, 46756497 - 46756270
Alignment:
Q  193 tattttaatcgattttaattgatttagttagaaattagttttgaaactagctctgaataatcaatttcaatctcatggggttgaagataatgaggttgaa 292  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46756497 tattttaatcgattttaattgatttagttagaaatcagttttaaaactaactctgaataatcaatttcaatctcatggggttgaagataatgcggttgaa 46756398  T
Q  293 gacaatatgaaataaatatatgatgtaggtagactatgataagatcagtgttcctataaaatctaatggtaaaaagtccactttcctatggtgggaaaca 392  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |||||    
T  46756397 gacaatatgaaataaatatatggtgtaggtagactatgataagatcagcgttcctataaaatctaatggtaaaaagtccacttttccatggtggaaaaca 46756298  T
Q  393 acttccccttcccaaattaaccgccacc 420  Q
    ||||||| |||||||||||| |||||||    
T  46756297 acttccctttcccaaattaaacgccacc 46756270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 326
Target Start/End: Original strand, 48911107 - 48911170
Alignment:
Q  263 tctcatggggttgaagataatgaggttgaagacaatatgaaataaatatatgatgtaggtagac 326  Q
    ||||||| |||||| |||||| |||||||||| ||  ||||||||| ||||||||||| |||||    
T  48911107 tctcatgaggttgatgataataaggttgaagataaagtgaaataaagatatgatgtagatagac 48911170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 43016789 - 43016969
Alignment:
Q  16 tatttcataccagcaggaggctgaataacctttgctacaagcggaagcactttactaacagcctggtatgactttgcaatcgggcaattcccattttgca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43016789 tatttcataccagcaggaggctgaataacctttgctacaagcggaagcactttactaacagcctggtatgactttgcaatcgggcaattcccattttgca 43016888  T
Q  116 gccagtcattgcctgcctcatgcttcgaaccatcctgaatatcaattaaacgaaacacgtcagagacactgaaaaagtatt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43016889 gccagtcattgcctgcctcatgcttcgaaccatcctgaatatcaattaaacgaaacacatcagagacactgaaaaagtatt 43016969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 11469128 - 11469076
Alignment:
Q  373 ctttcctatggtgggaaacaacttccccttcccaaattaaccgccacctctat 425  Q
    |||||| |||||||||||||||||||| |||| ||||||| ||||||| ||||    
T  11469128 ctttcccatggtgggaaacaacttccctttcctaaattaaacgccaccactat 11469076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 412
Target Start/End: Complemental strand, 14924721 - 14924682
Alignment:
Q  373 ctttcctatggtgggaaacaacttccccttcccaaattaa 412  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  14924721 ctttcccatggtgggaaacaacttccctttcccaaattaa 14924682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 50950897 - 50950929
Alignment:
Q  374 tttcctatggtgggaaacaacttccccttccca 406  Q
    |||||||||||||||||||||||||| ||||||    
T  50950897 tttcctatggtgggaaacaacttcccattccca 50950929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 193 - 378
Target Start/End: Original strand, 26471436 - 26471622
Alignment:
Q  193 tattttaatcgattttaattgatttagttagaaatt-agttttgaaactagctctgaataatcaatttcaatctcatggggttgaagataatgaggttga 291  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26471436 tattttaatcgattttaattgatttagttagaaaatcagttttgaaactagctctaaataatcaatttcaatctcatggggttgaagataatgaggttga 26471535  T
Q  292 agacaatatgaaataaatatatgatgtaggtagactatgataagatcagtgttcctataaaatctaatggtaaaaagtccactttcc 378  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  26471536 agacagtatgaaataaatatatggtgtaggtagactatgataagatcagtgttcctacaaaatttaatggtaaaaagtccactttcc 26471622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 24126020 - 24125980
Alignment:
Q  372 actttcctatggtgggaaacaacttccccttcccaaattaa 412  Q
    ||||||| |||||||||||||||| ||| ||||||||||||    
T  24126020 actttcccatggtgggaaacaactcccctttcccaaattaa 24125980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 38337478 - 38337526
Alignment:
Q  373 ctttcctatggtgggaaacaacttccccttcccaaattaaccgccacct 421  Q
    |||||| |||||||||||||||||||| |||||||||||| ||||||||    
T  38337478 ctttcccatggtgggaaacaacttccctttcccaaattaaacgccacct 38337526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 42108410 - 42108370
Alignment:
Q  380 atggtgggaaacaacttccccttcccaaattaaccgccacc 420  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  42108410 atggtgggaaacaacttccctttcccaaattaaacgccacc 42108370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 12350007 - 12349967
Alignment:
Q  380 atggtgggaaacaacttccccttcccaaattaaccgccacc 420  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  12350007 atggtgggaaacaacttccctttcccaaattaaacgccacc 12349967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 43925026 - 43925066
Alignment:
Q  380 atggtgggaaacaacttccccttcccaaattaaccgccacc 420  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  43925026 atggtgggaaacaacttccctttcccaaattaaacgccacc 43925066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 12350656 - 12350703
Alignment:
Q  374 tttcctatggtgggaaacaacttccccttcccaaattaaccgccacct 421  Q
    ||||| |||||||||||||| ||||| |||||||||||| ||||||||    
T  12350656 tttcccatggtgggaaacaatttccctttcccaaattaaacgccacct 12350703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 412
Target Start/End: Complemental strand, 43924537 - 43924498
Alignment:
Q  373 ctttcctatggtgggaaacaacttccccttcccaaattaa 412  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  43924537 ctttcccatggtgggaaacaacttccctttcccaaattaa 43924498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 6246832 - 6246784
Alignment:
Q  372 actttcctatggtgggaaacaacttccccttcccaaattaaccgccacc 420  Q
    ||||||| |||||||||||||| ||||| |||||||||||| |||||||    
T  6246832 actttcccatggtgggaaacaatttccctttcccaaattaaacgccacc 6246784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 1013392 - 1013348
Alignment:
Q  352 aatctaatggtaaaaagtccactttcctatggtgggaaacaactt 396  Q
    ||||||||||||||||  | ||||||||||||||||||| |||||    
T  1013392 aatctaatggtaaaaatccaactttcctatggtgggaaaaaactt 1013348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 47377598 - 47377638
Alignment:
Q  372 actttcctatggtgggaaacaacttccccttcccaaattaa 412  Q
    ||||||| |||||||||||||||| ||| ||||||||||||    
T  47377598 actttcccatggtgggaaacaactcccctttcccaaattaa 47377638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 12224 - 12184
Alignment:
Q  380 atggtgggaaacaacttccccttcccaaattaaccgccacc 420  Q
    |||||||||||||||||| | |||||||||||| |||||||    
T  12224 atggtgggaaacaacttctctttcccaaattaaacgccacc 12184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 12859 - 12907
Alignment:
Q  372 actttcctatggtgggaaacaacttccccttcccaaattaaccgccacc 420  Q
    ||||||| |||||||||||||||||| | | |||||||||| |||||||    
T  12859 actttcccatggtgggaaacaacttcacttccccaaattaaacgccacc 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 42651581 - 42651613
Alignment:
Q  374 tttcctatggtgggaaacaacttccccttccca 406  Q
    |||||||||||||||||||||||||| ||||||    
T  42651581 tttcctatggtgggaaacaacttccctttccca 42651613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University