View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_high_10 (Length: 487)
Name: NF11565_high_10
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 46305675 - 46306126
Alignment:
| Q |
18 |
agagaggcagctgcgttatcttgcggtgggaagttgaaggagattaatatggataagtgtttaggagtaacggatattggattggccaagattgctgttg |
117 |
Q |
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| T |
46305675 |
agagaggcagctgcgttatcttgcggtgggaagttgaaggagattaatatggataagtgtttaggagtaactgatattggattggccaagattgctgttg |
46305774 |
T |
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| Q |
118 |
ggtgtagtaagttggagaagttgagtttgaaatggtgtttggagatttctgatcttggtattgatcttctttctaagaagtgcttcgatttgaattttct |
217 |
Q |
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| T |
46305775 |
ggtgtagtaagttggagaagttgagtttgaaatggtgtttggagatttctgatcttggtattgatcttctttctaagaagtgcttcgatttgaattttct |
46305874 |
T |
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| Q |
218 |
tgatgtttcctatctcaaggtttgttactcatttgatttgtactcactatccttgtaaagttgttttacacattgtcatatccatttaaagatgtggcaa |
317 |
Q |
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| T |
46305875 |
tgatgtttcctatctcaaggtttgttactcatttcatttgtactcactatccttgtaaagttattttacacattgtcatatccatttaaagatgtggcaa |
46305974 |
T |
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| Q |
318 |
gacatgattgaattctgcttaaactctaatggatgaatatatttgcaaacataattgtctnnnnnnnntgtcacctttagtttttgtttccagtgtaatt |
417 |
Q |
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| T |
46305975 |
gacatgattgaattctgcttaaactctaatgg----atatatttgcaaacataattgtctaaaaaaaatgtcacctttagtttttgtttccagtgtaatt |
46306070 |
T |
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| Q |
418 |
ttgtttatttagtaagattagtgttgttctttcttcatttataatttcttgttcat |
473 |
Q |
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| T |
46306071 |
ttgtttatttagtaagattagtgttgtcctttcttcatttataatttcttgttcat |
46306126 |
T |
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