View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11565_high_11 (Length: 427)
Name: NF11565_high_11
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 102 - 417
Target Start/End: Complemental strand, 35993125 - 35992810
Alignment:
| Q |
102 |
cttacaccttccatataatagtatttttatagtagggtatataatttgagctatatatttttgnnnnnnngtcaagattatttacaaccacaatttaaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35993125 |
cttacaccttccatataatagtatttttatagtagggtatataatttgagctatatatttttgaaaaaaagtcaagattatttacaaccacaatttaaaa |
35993026 |
T |
|
| Q |
202 |
tctcgattgtatgttttacatgcatgctacaaaggatcatatatatgcaaataatttatggcttgattttatttcattttgaatctttaggcatggagtt |
301 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35993025 |
tctcgatggtatgttttacatgcatgctacaaaggatcatatatatgcaaataatttatggcttgattttattgcattttgaatctttaggcatggagtt |
35992926 |
T |
|
| Q |
302 |
agacaaatcagaacagggtgggctgatggaccagaatttgtgactcaatgtcctattcgtcctggagaaagttacacctatagatttaccattaatggac |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35992925 |
agacaaatcagaacagggtgggctgatggaccagaatttgtgactcagtgtcctattcgtcctggagaaagttacacctatagatttaccattaatggac |
35992826 |
T |
|
| Q |
402 |
aagaaggtaccctttg |
417 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35992825 |
aagaaggtaccctttg |
35992810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 35993201 - 35993165
Alignment:
| Q |
26 |
gtttctaaatttgatcaatcatgtagagtgacattcc |
62 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35993201 |
gtttctaaatttgatcaaccatgtagagtgacattcc |
35993165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 287 - 417
Target Start/End: Complemental strand, 32274273 - 32274143
Alignment:
| Q |
287 |
tttaggcatggagttagacaaatcagaacagggtgggctgatggaccagaatttgtgactcaatgtcctattcgtcctggagaaagttacacctatagat |
386 |
Q |
| |
|
||||||||||| ||| ||||||| || ||||| ||||| ||||| || |||||||||||||||||||| ||||||||||||| ||||||||||| | | |
|
|
| T |
32274273 |
tttaggcatggtgttcgacaaatgaggacaggatgggcagatggtcctgaatttgtgactcaatgtcccattcgtcctggagggagttacacctaccgtt |
32274174 |
T |
|
| Q |
387 |
ttaccattaatggacaagaaggtaccctttg |
417 |
Q |
| |
|
| || |||||||||||||||| || ||||| |
|
|
| T |
32274173 |
tcactgttaatggacaagaagggacactttg |
32274143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University