View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11565_high_12 (Length: 395)

Name: NF11565_high_12
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11565_high_12
NF11565_high_12
[»] chr5 (9 HSPs)
chr5 (24-392)||(40283119-40283487)
chr5 (186-391)||(40332959-40333164)
chr5 (147-391)||(40386237-40386481)
chr5 (186-392)||(40375991-40376197)
chr5 (212-350)||(40598559-40598697)
chr5 (238-350)||(40276849-40276961)
chr5 (70-119)||(40597781-40597830)
chr5 (25-64)||(40333946-40333985)
chr5 (25-63)||(40303490-40303528)
[»] chr6 (9 HSPs)
chr6 (4-47)||(5443965-5444008)
chr6 (2-47)||(5185054-5185099)
chr6 (2-53)||(5107978-5108029)
chr6 (2-47)||(5092799-5092844)
chr6 (4-53)||(5137800-5137849)
chr6 (2-47)||(5149900-5149945)
chr6 (2-47)||(5160696-5160741)
chr6 (2-47)||(5360778-5360823)
chr6 (2-47)||(5422064-5422109)


Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 24 - 392
Target Start/End: Complemental strand, 40283487 - 40283119
Alignment:
Q  24 acgagtatcttcccctctaaaactgaggaaaatctgccatttaccaagtgatactttccattcctcaattggtttacttccgaaggaagatcccaccttt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40283487 acgagtatcttcccctctaaaactgaggaaaatctgccatttagcaagtgatgctttccattcctcaattggtttacttccgaaggaagatcccaccttt 40283388  T
Q  124 ataattttttcaggtaacccttcacatttcccatttagtgcctttattttttcatataattcattaaattcattccatgatggcggttttgattgtattg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283387 ataattttttcaggtaacccttcacatttcccatttagtgcctttattttttcatataattcattaaattcattccatgatggcggttttgattgtattg 40283288  T
Q  224 taagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaattgcttcaacttt 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283287 taagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaattgcttcaacttt 40283188  T
Q  324 tgcacgcgcacgatcacgatttgaaatgagtttcttcttttgtctttcaactttcgtatagcctttgct 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40283187 tgcacgcgcacgatcacgatttgaaatgagtttcttcttttgtctttcaactttcatatagcctttgct 40283119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 186 - 391
Target Start/End: Complemental strand, 40333164 - 40332959
Alignment:
Q  186 attaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatct 285  Q
    |||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||    
T  40333164 attaaattcaatccatgatggtggttttgattgtaatttaagattctccattttttgcatgattatgtctgcttcttttagccactcaaacacaacatct 40333065  T
Q  286 ctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgatcacgatttgaaatgagtttcttcttttgtctttcaactttcgtatagc 385  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  40333064 ctaaccttttcagttttacgatcaattgcttcaacttttgcacgcacacgatcacgatttgaaatgagtttcttcttttgtctttcaactttcatgtagc 40332965  T
Q  386 ctttgc 391  Q
    ||||||    
T  40332964 ctttgc 40332959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 147 - 391
Target Start/End: Complemental strand, 40386481 - 40386237
Alignment:
Q  147 acatttcccatttagtgcctttattttttcatataattcattaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatg 246  Q
    |||||||  |||||||||  | |||||||| |  |||| |||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||| |||    
T  40386481 acatttcttatttagtgctgtaattttttcctgcaatttattaaattcaatccatgatggtggttttgattgtaatttaagattctccattttttgcatg 40386382  T
Q  247 atcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgatcacgatttg 346  Q
    |  || |||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||| |||||||||||||||    
T  40386381 actatttctgcttcttttagccactcaaacacaacatctctaaccttttcagttttactgtcaattgcttcaacttgtgcacgcacacgatcacgatttg 40386282  T
Q  347 aaatgagtttcttcttttgtctttcaactttcgtatagcctttgc 391  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  40386281 aaatgagtttcttcttttgtctttcaactttcatatagcctttgc 40386237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 186 - 392
Target Start/End: Complemental strand, 40376197 - 40375991
Alignment:
Q  186 attaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatct 285  Q
    |||||||||| |||||||||| ||||||||||||| || ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||    
T  40376197 attaaattcaatccatgatggtggttttgattgtactgcaagattctccacttcttgtatgattatgtctgttttttttagccactcaaacacaacatct 40376098  T
Q  286 ctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgatcacgatttgaaatgagtttcttcttttgtctttcaactttcgtatagc 385  Q
    || |||||||||||||||  |||||||||||||||||||||| || ||||||| |||||||||  |||||| ||||||||||||||||||||| ||||||    
T  40376097 ctgaccttttcagttttaggatcaattgcttcaacttttgcatgcacacgatcgcgatttgaatagagtttgttcttttgtctttcaactttcatatagc 40375998  T
Q  386 ctttgct 392  Q
    |||||||    
T  40375997 ctttgct 40375991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 350
Target Start/End: Original strand, 40598559 - 40598697
Alignment:
Q  212 ttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaat 311  Q
    ||||||||| ||| ||||| || |  ||||| ||||  || ||||||||||||||||||||||||||| ||||  | ||||||||||||||   |||| |    
T  40598559 ttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagt 40598658  T
Q  312 tgcttcaacttttgcacgcgcacgatcacgatttgaaat 350  Q
    ||||||||||||| | ||| || |||| |||||||||||    
T  40598659 tgcttcaacttttacgcgcacaagatctcgatttgaaat 40598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 350
Target Start/End: Complemental strand, 40276961 - 40276849
Alignment:
Q  238 tcttgtatgatcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgat 337  Q
    ||||||||||  ||||||| ||||||||||||||  | |||| |||| || ||||| ||| || ||  ||||||||||| |  |||||||| | ||||||    
T  40276961 tcttgtatgagtatgtctgcttcttttagccacttgatcacatcatcgctcaccttatcaattctatgatcaattgctttatattttgcactcacacgat 40276862  T
Q  338 cacgatttgaaat 350  Q
    |||||||||||||    
T  40276861 cacgatttgaaat 40276849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 40597781 - 40597830
Alignment:
Q  70 agtgatactttccattcctcaattggtttacttccgaaggaagatcccac 119  Q
    |||||| |||||||||||||||||||||||| ||  ||||||||||||||    
T  40597781 agtgatgctttccattcctcaattggtttacctcttaaggaagatcccac 40597830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 40333985 - 40333946
Alignment:
Q  25 cgagtatcttcccctctaaaactgaggaaaatctgccatt 64  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  40333985 cgagtatcttcccctctaaaactgagaaacatctgccatt 40333946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 40303528 - 40303490
Alignment:
Q  25 cgagtatcttcccctctaaaactgaggaaaatctgccat 63  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  40303528 cgagtatcttctcctctaaaactgatgaaaatctgccat 40303490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 5444008 - 5443965
Alignment:
Q  4 agatgtgaagtgaaggaagcacgagtatcttcccctctaaaact 47  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  5444008 agatgtgaagtgaaggaagcacgagtatctttccctctaaaact 5443965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 5185054 - 5185099
Alignment:
Q  2 agagatgtgaagtgaaggaagcacgagtatcttcccctctaaaact 47  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  5185054 agagatgtgaagtaaaggaagaacgagtatcttcccctctaaaact 5185099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 5107978 - 5108029
Alignment:
Q  2 agagatgtgaagtgaaggaagcacgagtatcttcccctctaaaactgaggaa 53  Q
    |||||||||||||||||||||||||||||||||  ||||| ||||| |||||    
T  5107978 agagatgtgaagtgaaggaagcacgagtatctttgcctctgaaacttaggaa 5108029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 5092844 - 5092799
Alignment:
Q  2 agagatgtgaagtgaaggaagcacgagtatcttcccctctaaaact 47  Q
    |||||||||||||||| || |||||||||||||  |||||||||||    
T  5092844 agagatgtgaagtgaatgatgcacgagtatcttttcctctaaaact 5092799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 5137800 - 5137849
Alignment:
Q  4 agatgtgaagtgaaggaagcacgagtatcttcccctctaaaactgaggaa 53  Q
    ||||||||||||||||| | |||||| |||||||||| |||||| |||||    
T  5137800 agatgtgaagtgaaggatgaacgagtgtcttcccctcgaaaactcaggaa 5137849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 5149900 - 5149945
Alignment:
Q  2 agagatgtgaagtgaaggaagcacgagtatcttcccctctaaaact 47  Q
    |||||||||||||||| || || || ||||||||||||||||||||    
T  5149900 agagatgtgaagtgaatgatgcgcgcgtatcttcccctctaaaact 5149945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 5160696 - 5160741
Alignment:
Q  2 agagatgtgaagtgaaggaagcacgagtatcttcccctctaaaact 47  Q
    |||||||||||||||| || |||||||||||||  |||||||||||    
T  5160696 agagatgtgaagtgaatgatgcacgagtatcttttcctctaaaact 5160741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 5360823 - 5360778
Alignment:
Q  2 agagatgtgaagtgaaggaagcacgagtatcttcccctctaaaact 47  Q
    ||||||||||||||||||||| ||||||||| || || ||||||||    
T  5360823 agagatgtgaagtgaaggaagaacgagtatcctctcccctaaaact 5360778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 5422109 - 5422064
Alignment:
Q  2 agagatgtgaagtgaaggaagcacgagtatcttcccctctaaaact 47  Q
    |||||||||||||||| || ||||||||||| || |||||||||||    
T  5422109 agagatgtgaagtgaatgatgcacgagtatcctctcctctaaaact 5422064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University