View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_high_17 (Length: 312)
Name: NF11565_high_17
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 37845943 - 37845643
Alignment:
| Q |
1 |
atattacaagtactacatggttgtagtgttgtattggctacaaatgcatcaccatcttccacctcaccacacctccacttacacatgtcgcttttataca |
100 |
Q |
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| T |
37845943 |
atattacaagtactacatggttgtagtgttgtattggctacaaatgcatcaccatcttccacctcaccacacctccacttacacatgtcgcttttataca |
37845844 |
T |
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| Q |
101 |
agtcaataacatctttcatggtcggtctctttcgcagatctgtcgctgtgcattgcaatgccaataaaaacattgacgtgacttgcttggttagttccac |
200 |
Q |
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| T |
37845843 |
agtcaataacatctttcatggtcggtctctttcgcagatctgtcgctgtgcattgcaatgccaataaaaacattgacgtgacttgcttggttagttccac |
37845744 |
T |
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| Q |
201 |
tgaattgggaaatgaactggcaaggtatgaatcgacaatcttctcgattttgcctgtttccagccatatagatcttgcccagcacactaaactggtctcc |
300 |
Q |
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| T |
37845743 |
tgaattgggaaatgaactggcaaggtatgaatcgacaatcttctcgattttgcctgtttccagccatatagatcttgcccagcacactaaactggtctcc |
37845644 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
37845643 |
t |
37845643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 104 - 291
Target Start/End: Complemental strand, 37844227 - 37844040
Alignment:
| Q |
104 |
caataacatctttcatggtcggtctctttcgcagatctgtcgctgtgcattgcaatgccaataaaaacattgacgtgacttgcttggttagttccactga |
203 |
Q |
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| T |
37844227 |
caataacatctttcatgattggtctctttcgtaaatccttctctgtacattgcaatgccaataaaaacattgtagtgacttgcctggtcagcgcagctga |
37844128 |
T |
|
| Q |
204 |
attgggaaatgaactggcaaggtatgaatcgacaatcttctcgattttgcctgtttccagccatatagatcttgcccagcacactaaa |
291 |
Q |
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| T |
37844127 |
attgggaaatcttcttgcaaggtatgaatcagcaatgtactcaattttgcctgtttccagccatacagatctagcccagctcactaaa |
37844040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 37838391 - 37838223
Alignment:
| Q |
94 |
ttatacaagtcaataacatctttcatggtcggtctctttcgcagatctgtcgctgtgcattgcaatgccaataaaaacattgacgtgacttgcttggtta |
193 |
Q |
| |
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| T |
37838391 |
ttataaaagtcaataacatctttcatggtcggcctccttcgtggatccttctctgtgcattgtaatgccaatgaaagcactgcattgacttgcttggcta |
37838292 |
T |
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| Q |
194 |
gttccactgaattgggaaatgaactggcaaggtatgaatcgacaatcttctcgattttgcctgtttcca |
262 |
Q |
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| T |
37838291 |
gcactgctgaattgggaaatgcacttgaaagaaatggatcaacaatcttctcaattttacttgtttcca |
37838223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 308
Target Start/End: Complemental strand, 37832782 - 37832654
Alignment:
| Q |
180 |
gacttgcttggttagttccactgaattgggaaatgaactggcaaggtatgaatcgacaatcttctcgattttgcctgtttccagccatatagatcttgcc |
279 |
Q |
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||||||||||| |||| | ||||||||||||| ||| |||||||| ||| ||||||||||| |||||||||||| |||||||| |||||| ||| |
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| T |
37832782 |
gacttgcttggctagtgctgatgaattgggaaattcacttgcaaggtaatgatcaacaatcttctcagttttgcctgttttcagccatacagatctagcc |
37832683 |
T |
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| Q |
280 |
cagcacactaaactggtctcctatgcttc |
308 |
Q |
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||| |||||| |||||||| |||||| |
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| T |
37832682 |
cagatcactaagggggtctcctctgcttc |
37832654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 262
Target Start/End: Complemental strand, 37851708 - 37851552
Alignment:
| Q |
106 |
ataacatctttcatggtcggtctctttcgcagatctgtcgctgtgcattgcaatgccaataaaaacattgacgtgacttgcttggttagttccactgaat |
205 |
Q |
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|||||| |||||||||| | |||||||| |||| || |||||||||| ||||||||| ||| || || ||||||||||| |||| | ||||| |
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| T |
37851708 |
ataacaactttcatggttgtcctctttcgtggatccttctctgtgcattgtaatgccaatgaaagcactgcattgacttgcttgactagtgttattgaat |
37851609 |
T |
|
| Q |
206 |
tgggaaatgaactggcaaggtatgaatcgacaatcttctcgattttgcctgtttcca |
262 |
Q |
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| T |
37851608 |
taggaaatgcacttacaaggtatggatcaacaatgttctcaatttttcctgtctcca |
37851552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 282
Target Start/End: Complemental strand, 36867072 - 36866884
Alignment:
| Q |
94 |
ttatacaagtcaataacatctttcatggtcggtctctttcgcagatctgtcgctgtgcattgcaatgccaataaaaacattgacgtgacttgcttggtta |
193 |
Q |
| |
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||||| ||| ||||||||||||||||||| || ||| |||| |||| || |||||||||| ||||||||| ||| || || ||||||||| | || |
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| T |
36867072 |
ttataaaaggcaataacatctttcatggttggcctccttcgtggatccttctctgtgcattgtaatgccaatgaaagcactgcattgacttgctcagcta |
36866973 |
T |
|
| Q |
194 |
gttccactgaattgggaaatgaactggcaaggtatgaatcgacaatcttctcgattttgcctgtttccagccatatagatcttgcccag |
282 |
Q |
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|| | ||||||||||||||| ||| |||||||| | |||| ||||||||||||||||||||||||||||| ||| |||||| |||||| |
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| T |
36866972 |
gtacttctgaattgggaaatgcacttgcaaggtagggatcggcaatcttctcgattttgcctgtttccagcaatacagatctagcccag |
36866884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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