View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_high_39 (Length: 214)
Name: NF11565_high_39
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 46694247 - 46694419
Alignment:
| Q |
18 |
caacaaacccaaccacaccactggcgaggtacatgtacccaccacaacaggggnnnnnnncatagctgactcgtaaaaaggcatccaccagagacttgga |
117 |
Q |
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| T |
46694247 |
caacaaacccaaccacaccaccggcgaggtacatgtacccaccacaacagggaaaaaaagcatagatgactcgtaaaaaggcatccaccagagactagga |
46694346 |
T |
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| Q |
118 |
gaaggcgtccgacaccgaagtaaatcacatccaagccaaaaagcaacaggaaccctccgataagaatcaacac |
190 |
Q |
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| T |
46694347 |
gaaggcgtccgacaccaaagtaaatcacatccaagccaataagcaacaagaaccctccggtaagaatcaacac |
46694419 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 2062253 - 2062180
Alignment:
| Q |
88 |
tcgtaaaaaggcatccaccagagacttggagaaggcgtccgacaccgaagtaaatcacatccaagccaaaaagc |
161 |
Q |
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| T |
2062253 |
tcgtaaacaggtatccaccggagacaaggagaaggcgtccgacaccggaataaacaacaaccaagccaaaaagc |
2062180 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 27712411 - 27712334
Alignment:
| Q |
88 |
tcgtaaaaaggcatccaccagagacttggagaaggcgtccgacaccgaagtaaatcacatccaagccaaaaagcaaca |
165 |
Q |
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| T |
27712411 |
tcgtaaacaggcaaccaccggtgacaaggagaaggcgtctggcaccggagtaaacaacaaccaagccaaaaagcaaca |
27712334 |
T |
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