View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_high_4 (Length: 605)
Name: NF11565_high_4
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 28 - 588
Target Start/End: Original strand, 8199053 - 8199613
Alignment:
| Q |
28 |
tatttatttatagataccctagacggctagacttaaaatagatgtcaacaacgaataaattgaagtaaatataaatgcgataacagtctagtactccaac |
127 |
Q |
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| T |
8199053 |
tatttatttatagataccctagacggctagacttaaaatagatgtcaacaacgaataaattgaagtaaatataaatgcgaaaacagtctagtactccaac |
8199152 |
T |
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| Q |
128 |
ttaaaaaccaacttcaaggcctaaaaacatggactgaaaaatgccaaaaacatccccaaagacactttcacacaatcatttaatcattatctagaaaggc |
227 |
Q |
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| T |
8199153 |
ttaaaaaccaacttcaaggcctaaaaacatggactgaaaaatgccaaaaacatccccaaagacactttcacacaatcatttaatcattatctagaaaggc |
8199252 |
T |
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| Q |
228 |
ctaggataatccagttcctcgattataaatcataaaaacacctgagaaaaattacagggaaatgtaccaagatctacaaaagaaaagcatagattaaatt |
327 |
Q |
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| T |
8199253 |
ctaggataatccagttcctcgattataaatcataaaaacacctgagaaaaattacagggaaatgtaccaagatctacaaaagaaaagcatagattaaatt |
8199352 |
T |
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| Q |
328 |
aatatgaggttgttgtgatgatgatattggaggttagatcctcaaccaagtaacggatcctacttctaacattattcctcctctaagactgaatagatga |
427 |
Q |
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| T |
8199353 |
aatatgaggttgttgtgatgatgatattggaggttagatcctcaaccaagtaaccgatcctacttctaacattattcctcctctaagactgaatagatga |
8199452 |
T |
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| Q |
428 |
tttctaaccttcaagacgctccttccacccagcaccctttaatagagcgatggtatctgactgtataagagaacccatttggctttcaatctcttcaaga |
527 |
Q |
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| T |
8199453 |
tttctaaccttcaagacgctccttccacccagcaccctttaatagagcgatggtatctgactgtataagagaacctatttggctttcaatctcttcaaga |
8199552 |
T |
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| Q |
528 |
cccatctcagtgggctgcattcatttagatacacaagggttgtataaactggtattagtta |
588 |
Q |
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| T |
8199553 |
cccatctcagtgggctgcattcatttagatacacaagggttgtataaactggtattagtta |
8199613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 415 - 576
Target Start/End: Original strand, 42356545 - 42356706
Alignment:
| Q |
415 |
actgaatagatgatttctaaccttcaagacgctccttccacccagcaccctttaatagagcgatggtatctgactgtataagagaacccatttggctttc |
514 |
Q |
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| T |
42356545 |
actgaattgatgatttccaaccttcaagacgctccttccacacagcacttttcaataaagtgatggtatctgactgtagaagagaacctattcggctttc |
42356644 |
T |
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| Q |
515 |
aatctcttcaagacccatctcagtgggctgcattcatttagatacacaagggttgtataaac |
576 |
Q |
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| T |
42356645 |
aatctcttcaagacccatctcagtgggctgcatgcatttagatacacaaaggttgtataaac |
42356706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 42356161 - 42356291
Alignment:
| Q |
29 |
atttatttatagataccctagacggctagacttaaaatagatgtcaacaacgaataaattgaagtaaat---ataaatgcgataacagtcta--gtactc |
123 |
Q |
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||||| ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||| |||||||| | | || |||| |||||| |
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| T |
42356161 |
atttacttatagataccctagacggctagacctaaaatacatgtcaacaaagaataaattgaagtaaatatgataaatgcaaaaccattctattgtactc |
42356260 |
T |
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| Q |
124 |
caacttaaaaaccaacttcaaggcctaaaaa |
154 |
Q |
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| T |
42356261 |
caacttataaaacatcttcaaggcctaaaaa |
42356291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 249 - 410
Target Start/End: Original strand, 42356360 - 42356518
Alignment:
| Q |
249 |
attataaatcataaaaacacctgagaaaaattacagggaaatgtaccaagatctacaaaagaaaagcatagatt---aaattaatatgaggttgttgtga |
345 |
Q |
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||||||||| || |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||| |||||| ||||||| || |
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| T |
42356360 |
attataaataatcaaaacacctgagaaaaattacaggaaaatgtaccaagatatacaaaagcaaagcataaattatcaaattagtatgagggtg------ |
42356453 |
T |
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| Q |
346 |
tgatgatattggaggttagatcctcaaccaagtaacggatcctacttctaacattattcctcctc |
410 |
Q |
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| T |
42356454 |
taatgacgttggaggttagatcctcaaccaagttatcgatcttacttccaacatcattcctcctc |
42356518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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