View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_high_40 (Length: 209)
Name: NF11565_high_40
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_high_40 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 48892435 - 48892227
Alignment:
| Q |
1 |
agcagaagaaaaatgacaaaaacaaagtcataaccaaagtacaagaagattcagagaagaagaccttagtttatctaccaaagcctataagggtcaagaa |
100 |
Q |
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| T |
48892435 |
agcagaagaaaaatgacaaaaacaaagtcataaccaaagtaccagaagattcagagaagaagaccttagtttatctaccaaagcctataagggtcaagaa |
48892336 |
T |
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| Q |
101 |
gactttatcatcaataataccaagaactgatataaccttgaatttggaatacaactcagtaacaacaagccaagaggaagagcaaagaacagaaacaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48892335 |
gactttatcatcaataataccaagaactgatataaccttgaatttggaatacaaatcagtaacaacaagccaagaggaagagcaaagaacagaaacaaaa |
48892236 |
T |
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| Q |
201 |
gagagagac |
209 |
Q |
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||||||||| |
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| T |
48892235 |
gagagagac |
48892227 |
T |
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