View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_high_8 (Length: 520)
Name: NF11565_high_8
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 475
Target Start/End: Original strand, 27141571 - 27142030
Alignment:
| Q |
17 |
aagaactagtgcacacaagttccacatatatttaatttaagggattgatctagtggtaaaaagataagtgtggaactcaaactttgaaaataaatcatat |
116 |
Q |
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| T |
27141571 |
aagaactagtgcacacaagttccacatatatttaatttaagggattggtctagcggtaaaaagataaatctggaactcaaactttgaaaataaattatat |
27141670 |
T |
|
| Q |
117 |
ttttgataaaatttaattattgaaaaattaagcatcaaattacatgttgatttttcattaaaagaatttcatgcaaagatagattacctttattttttga |
216 |
Q |
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| T |
27141671 |
ttttgataaaatttaattattgaaaaattaagcatcaaattacatgttgatttttcatttaaagaatttcatgcaaagacagattacctttattttttga |
27141770 |
T |
|
| Q |
217 |
ctaagaaccagattaccttattttatttgtcaatcttctaaatattataagcattttccttaaaattgtcaattgtctctattattgaatgaattgacta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27141771 |
ctaagaaccagattaccttattttatttgtcaatcttctaaatattataagcattttccttaaaattgtcaattgtctctattattgaatgaatcgacta |
27141870 |
T |
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| Q |
317 |
ttatcatccttttcttgtattgcaatgctcataagttcatcatttttatttcttccgtcaaaaagataataa-ttgtttatttattcattagtctcatca |
415 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| |
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| T |
27141871 |
ttatcatctttttcttgtattgcaatgctcataagttcatcatttttatttcttccgtcaaaaagataataatttttttatttattcattagtctcgtca |
27141970 |
T |
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| Q |
416 |
acttttcttagtagaatggcttagtcccactctcacctctcatgtagcattcatatgttg |
475 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27141971 |
acttttcttagtagaatggcttagtctcactctcacctctcatgtagcattcatatgttg |
27142030 |
T |
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