View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_low_10 (Length: 493)
Name: NF11565_low_10
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 45513283 - 45512808
Alignment:
| Q |
1 |
tgacaagttcgtgaaagcatgaggtatttgaccataaagcccattgtaagaaaggtcaagaagggtaagtttctcaaagtgactgaaccataatggaata |
100 |
Q |
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| T |
45513283 |
tgacaagttcgtgaaagcatgaggtatttgaccataaagcccattataagaaaggtcaagaagggtaagtttctcaaagtgaccgaaccataatggaata |
45513184 |
T |
|
| Q |
101 |
gaagtgaaattatttccagaaaggtagagtgattcaatggaagtcatgtttccaaaagactcaggaatcggaccatgaagctcatttgatgagagatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45513183 |
gaagtgaaattatttccagaaaggtagagtgattcaatggaagtcatgtttccaaaagactcaggaatcggaccatgaagctcatttgatgagagatcaa |
45513084 |
T |
|
| Q |
201 |
gatagataagagatgtcatgttttggaaagcataacgaggaatgagtgaattgtcaactctacatccagacagtgaaagatttaataaagaaggaagtgt |
300 |
Q |
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| T |
45513083 |
gatagataagagatgtcatgttttggaaagcataacgaggaatgagtgaattgtcaactctacatccagacagtgaaagatttaataaagaaggaagtgt |
45512984 |
T |
|
| Q |
301 |
attgagtacctggaacaagttgcgcttgtcattgagacgaataccactcaagtcaaggtgtttgagtgagtgaaggtttgaaatccaactggtgtcgtca |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45512983 |
attgagtacctggaacaagttgcgcgtgtcattgagacgaataccactcaagtcaaggtgtttgagtgagtgaaggtttgaaatccaactggtgccgtca |
45512884 |
T |
|
| Q |
401 |
tccatttgtaattctctctcttcaaattgcgtaaggtaatagtaattgaagctgagatcaaggaattgtaggttct |
476 |
Q |
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| T |
45512883 |
tccatttgtaattctctctcttcaaattgcgtaaggtaatagtaattgaagctgagatcaaggaatcgtaggttct |
45512808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 45513624 - 45513524
Alignment:
| Q |
86 |
aaccataatggaatagaagtgaaattatttccagaaaggtagagtgattcaatggaagtcatgtttccaaaagactcaggaatcggaccatgaagctcat |
185 |
Q |
| |
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|||||| ||||||| ||||| ||| ||||| ||||||| || ||||||| ||||||||||||| |||| | | ||||| |||||||||||||||| |
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| T |
45513624 |
aaccatgatggaattgaagttaaactatttttagaaaggctaaggtattcaattgaagtcatgtttcgaaaaacccctggaattggaccatgaagctcat |
45513525 |
T |
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| Q |
186 |
t |
186 |
Q |
| |
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| T |
45513524 |
t |
45513524 |
T |
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