View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_low_14 (Length: 388)
Name: NF11565_low_14
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 35915843 - 35916201
Alignment:
| Q |
11 |
cagagacaacattgatgttttgcttgtttttccaaatagaatgaaatagaagctttactacgtctgtagtactatgcatatgcatatattatgtcattag |
110 |
Q |
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| T |
35915843 |
cagagacaacattgatgttttgcttgtttttccaaatagaatgaaatagaagctttactacttctgtagtactatgcatatgcatatattatgtcattag |
35915942 |
T |
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| Q |
111 |
tattactcattcattagcctgtcaagtaatgcttattaatacagtaccatttttacattggattaaaggacaatatagattaatgtcggcttaacttagt |
210 |
Q |
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| T |
35915943 |
tattactcattcattagcctgtcaagtaaagcttattaatacagtaccatttttacattggattaaaggacaatatagattaatgtcggcttaacttagt |
35916042 |
T |
|
| Q |
211 |
ttaggttttttcttgatcactttatccatatgtactgacaaaacatcatggacaataaggctaacctgagctaaagctggaaggacaggccttccagttt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35916043 |
ttaggttttttcttgatcactttatccatatgtactgacaaaacatcatagacaataaggctaacctgagctaaagctggaaggactggccttccagttt |
35916142 |
T |
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| Q |
311 |
gttcaagaaaaccagcacaatccccaagtgcaaagacatcttccacagatggaacacgc |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916143 |
gttcaagaaaaccagcacaatccccaagtgcaaagacatcttccacagatggaacacgc |
35916201 |
T |
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