View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_low_15 (Length: 385)
Name: NF11565_low_15
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 4351913 - 4351529
Alignment:
| Q |
1 |
atgcagaaggaaacctgtctaaaagttcgaggacggctagtggttccagcaactgcaacagtcaaaagagacaataagtttccggtggttctttctatga |
100 |
Q |
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| T |
4351913 |
atgcagaaggaaacctgtctaaaagttcgaggacggctagtggttccagcaactgcaacagtcaaaagaaacaataagtttccagtggttctttctatga |
4351814 |
T |
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| Q |
101 |
ttaagaaatatcacttttctgtttgttttctttacaagaagaaaagagcccaaaagggttttggcattaataagaaatattacgtccgctaagttcgaaa |
200 |
Q |
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| T |
4351813 |
ttaagaaatgtcactattctgtttgttttctttacgagaagaaaagagcccaaaagggttatggcattaataagaaatattacgtcctttaagttcgaaa |
4351714 |
T |
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| Q |
201 |
ttagagaattggattataatttaattaatcctcttacattaataagaacaacaaacattgaattgccaatatgtaacttcctcagcattgaggcactgaa |
300 |
Q |
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| T |
4351713 |
ttagagaattggattataatttaattaatccccttacattaataagaacaacaaacattgaattgccaatatgtaacttcctcagcattgaggcactgaa |
4351614 |
T |
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| Q |
301 |
ctgaaacagtcttaataaaatcaatcacagggttgnnnnnnnncatgcattatactaagatgtgataatttccccacatttccct |
385 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4351613 |
ctgaaatagtcttaataaaatcaatcacagggttgaaaaaaaacatgcattatactaagatgtgataatttccccacatttccct |
4351529 |
T |
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