View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_low_16 (Length: 383)
Name: NF11565_low_16
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 205 - 375
Target Start/End: Original strand, 7135022 - 7135192
Alignment:
| Q |
205 |
ccactcatcaatgctattagactttatcataggtacacctaaatttggcaaacgttgaggatcatggcattgcaaatttacgtgtattggtttccatgaa |
304 |
Q |
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| T |
7135022 |
ccactcatcaatgctattagactttatcataggtacacctaaatttggcaaacgttgaggatcatggcattgcaaatttacgtgtattggtttccatgaa |
7135121 |
T |
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| Q |
305 |
ggagcaattattttaccaagatttgcaccgctactgacggttacttgcatgagaattatactccctatgct |
375 |
Q |
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| T |
7135122 |
ggatcaattattttaccaagatttgcaccgctactgacggttacttgcatgagaattatactccttatgct |
7135192 |
T |
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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 7134881 - 7134980
Alignment:
| Q |
46 |
cttgtatacgatccataataaaccaccttcgtttctcaccttatccgtgtcgtgaatcgtaagcgccacgtgcattaaaggatatatacattgagtcaac |
145 |
Q |
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| T |
7134881 |
cttgtatacgatccataataaaccttcttcgtttctcaccttatccgtgtcgtgaatcctaagcgccacgtgcattaaaggatatataccttgactcaac |
7134980 |
T |
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