View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_low_17 (Length: 383)
Name: NF11565_low_17
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 37846054 - 37846380
Alignment:
| Q |
1 |
cggataaatttccactgggagtctatgattgggatgattggaaactcatgtctagctagacctgcagttggtatccatggacttgtaattcaactaatgg |
100 |
Q |
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| T |
37846054 |
cggataaatttccactgggagtctatgattgggatgattggaaactcatgtctag----acctgcagttggtatccatggacttgtaattcaactaatgg |
37846149 |
T |
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| Q |
101 |
gaaattgtgaggcagaggttaaaacagtgatggtagctgctctaattgttccaaaaataacctattcccagccttgtttgatttaccttccctctatcac |
200 |
Q |
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| T |
37846150 |
gaaattgtgagacagaggttaaaacagtggtggtagctgctctaattgttccaaaaataacctattcccagccttgtttgatttaccttccctctatcac |
37846249 |
T |
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| Q |
201 |
tgggccaacacttacacaacttttcaattggtttttcctctcacagtggggtcaatatatgtaccaaaagaaatccttgtattatcaacctaaatcatac |
300 |
Q |
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| T |
37846250 |
tgggccaacacttacacaacttttcaattggtttttcctctcacagtggggtcaatatatgtaccaaaagaaatccttgtattatcaacctaaatcatac |
37846349 |
T |
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| Q |
301 |
tttatacatgccaatcatatagactcccttc |
331 |
Q |
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| T |
37846350 |
tttatacatgccaatcatatagactcccttc |
37846380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 127 - 315
Target Start/End: Original strand, 37844614 - 37844802
Alignment:
| Q |
127 |
gtgatggtagctgctctaattgttccaaaaataacctattcccagccttgtttgatttaccttccctctatcactgggccaacacttacacaacttttca |
226 |
Q |
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| T |
37844614 |
gtgaaggtagctgctctgaatgttccaaaagtaacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttca |
37844713 |
T |
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| Q |
227 |
attggtttttcctctcacagtggggtcaatatatgtaccaaaagaaatccttgtattatcaacctaaatcatactttatacatgccaat |
315 |
Q |
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| T |
37844714 |
attggttttttctctcacgttggggccaatatatgcaccttcaacaatccttgtattatcaacccaaatcatacttcttaaatgccaat |
37844802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 37851832 - 37851950
Alignment:
| Q |
141 |
tctaattgttccaaaaataacctattcccagccttgtttgatttaccttccctctatcactgggccaacacttacacaacttttcaattggtttttcctc |
240 |
Q |
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|||| |||||||||||||||||||| | | || ||||||| | || ||||||||||||||| |||| |||||| ||| |||||| ||||||||||| |
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| T |
37851832 |
tctagttgttccaaaaataacctatgcttggtctagtttgatcttccgtccctctatcactggtccaatacttaccaaacctttcaactggtttttccta |
37851931 |
T |
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| Q |
241 |
tcacagtggggtcaatata |
259 |
Q |
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| T |
37851932 |
tcacattggggtcaatata |
37851950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 281
Target Start/End: Original strand, 35025470 - 35025610
Alignment:
| Q |
141 |
tctaattgttccaaaaataacctattcccagccttgtttgatttaccttccctctatcactgggccaacacttacacaacttttcaattggtttttcctc |
240 |
Q |
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|||| |||||| |||||||||||| | |||| ||||||| | |||||||||||||||||| |||| |||||| ||| |||||| ||||||||||| |
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| T |
35025470 |
tctagttgttctgaaaataacctatgcttggcctagtttgatcttccttccctctatcactggtccaatacttaccaaacctttcaactggtttttccta |
35025569 |
T |
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| Q |
241 |
tcacagtggggtcaatatatgtaccaaaagaaatccttgta |
281 |
Q |
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| T |
35025570 |
acacgttggggtcaatataggtacctgcagaaatccttgta |
35025610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 37838551 - 37838621
Alignment:
| Q |
189 |
tccctctatcactgggccaacacttacacaacttttcaattggtttttcctctcacagtggggtcaatata |
259 |
Q |
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| T |
37838551 |
tccctctatcaccggtccaatacttaccaaacctttcaattggtttttcctatcacgttggggtcaatata |
37838621 |
T |
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