View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11565_low_2 (Length: 631)

Name: NF11565_low_2
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11565_low_2
NF11565_low_2
[»] chr7 (13 HSPs)
chr7 (11-613)||(45269696-45270295)
chr7 (112-609)||(45273240-45273744)
chr7 (112-339)||(45281773-45281988)
chr7 (436-603)||(45278918-45279090)
chr7 (101-339)||(45293113-45293339)
chr7 (101-339)||(45302073-45302299)
chr7 (434-557)||(45281635-45281758)
chr7 (431-587)||(45292942-45293101)
chr7 (431-587)||(45301902-45302061)
chr7 (9-85)||(45273753-45273829)
chr7 (9-85)||(45281997-45282073)
chr7 (9-76)||(45293346-45293413)
chr7 (9-76)||(45302306-45302373)
[»] chr3 (2 HSPs)
chr3 (340-430)||(13218205-13218295)
chr3 (340-416)||(54180853-54180929)
[»] scaffold0002 (1 HSPs)
scaffold0002 (340-430)||(239414-239504)


Alignment Details
Target: chr7 (Bit Score: 533; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 11 - 613
Target Start/End: Complemental strand, 45270295 - 45269696
Alignment:
Q  11 caaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggccagaagaaccaaacaagccagaaaaacattatga 110  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  45270295 caaaggcagtcatcatggaatccacaattggtgattttattcatcaagatggatggaccacttggccagaagaacaaaacaagccagaaaaacatcatga 45270196  T
Q  111 aaacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45270195 aaacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagc 45270096  T
Q  211 gaggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcatgatcttcatgttcctcact 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45270095 gaggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcact 45269996  T
Q  311 accttggcttcaaagcttgaaaattaaactaatgtttctattcagtggccgtggttattggcataaaattattgaatccatcgtttgggctcataataaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||  || |||| |||||||||||||||||||||||||||    
T  45269995 accttggcttcaaagcttgaaaattaaactaatgtttctattcatcgggcgtggttattggcaagaacttatagaatccatcgtttgggctcataataaa 45269896  T
Q  411 ttaaaaggttctcctgctacagagagtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggggat 510  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45269895 ttaaaaggttctcctgctatagagagtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggagat 45269796  T
Q  511 ccaccagaaatacaaacgaaaatttgctcgaatgaaagtataagcttcttcaattttcatttgatcattcaaatatattattcagaagtgttactgcaag 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45269795 ccaccagaaatacaaacgaaaatttgctcgaatgaaagtataag---cttcaattttcatttgatcattcaaatatattattcagaagcgttactgcaag 45269699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 112 - 609
Target Start/End: Complemental strand, 45273744 - 45273240
Alignment:
Q  112 aacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcg 211  Q
    ||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||  ||    
T  45273744 aacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccg 45273645  T
Q  212 aggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcatgatcttcatgttcctcacta 311  Q
    |||||| ||||| ||| ||  ||||||||||| | ||||||||            ||||||||||| |||||||||| ||| ||||||||||||||||||    
T  45273644 aggctaacaaattcacagctggtatatggctccaagctggacc------------caagtctgcagctgaatggttgaatggtcttcatgttcctcacta 45273557  T
Q  312 ccttggcttcaaagcttgaaaattaaactaatgtttctattcagtggccgtggttattggcataaaattattgaatccatcgtttgggctcataataaat 411  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45273556 ccttggcttcaaagcttgaaaattaaactaatgtttctattcagcggccgtggttattggcataaacttattgaatccatcgtttgggctcataataaat 45273457  T
Q  412 taaaaggttctcctgcta--------------cagagagtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgttt 497  Q
    |||||| | |||||| ||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45273456 taaaagttgctcctgttactcagtgtaactctcagagagtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttgctgttt 45273357  T
Q  498 ttgtacaggggatccaccagaaatacaaacgaaaatttgctcgaatgaaagtataagcttc----ttcaattttcatttgatcattcaaatat-attatt 592  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||    |||| ||||| ||||||||||||||||| |||||     
T  45273356 ttgtacaggggatccaccagtaatacaaatgaaaatttgctcgaatgatagtataagcttcaattttcatttttcctttgatcattcaaatataattata 45273257  T
Q  593 cagaagtgttactgcaa 609  Q
    |||||  ||||||||||    
T  45273256 cagaaacgttactgcaa 45273240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 112 - 339
Target Start/End: Complemental strand, 45281988 - 45281773
Alignment:
Q  112 aacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcg 211  Q
    ||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||  ||    
T  45281988 aacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccg 45281889  T
Q  212 aggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcatgatcttcatgttcctcacta 311  Q
    |||||| ||||| ||| ||  ||||||||||| | |||||            |||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  45281888 aggctaacaaattcacagctggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcacta 45281801  T
Q  312 ccttggcttcaaagcttgaaaattaaac 339  Q
    ||||||||||||||||||||||||||||    
T  45281800 ccttggcttcaaagcttgaaaattaaac 45281773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 436 - 603
Target Start/End: Complemental strand, 45279090 - 45278918
Alignment:
Q  436 gtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggggatccaccagaaatacaaacgaaaattt 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||| ||||||||    
T  45279090 gtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaattatctttcctatttttgtacatgagatccaccagaaatacaaatgaaaattt 45278991  T
Q  536 gctcgaatgaaagtataagcttc---ttcaattttcatttgatcattcaaatat--attattcagaagtgtta 603  Q
    |||||||| | ||| ||||||||   ||  |||||  ||| |||||||||||||  |||||||||||||||||    
T  45278990 gctcgaattatagtttaagcttcaattttcattttttttttatcattcaaatataaattattcagaagtgtta 45278918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 101 - 339
Target Start/End: Complemental strand, 45293339 - 45293113
Alignment:
Q  101 aacattatgaaaacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcat 200  Q
    |||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |||| |||    
T  45293339 aacattttgaaaacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccat 45293240  T
Q  201 tagcaggagcgaggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcatgatcttcat 300  Q
    |||||||  |||||||||||||| ||| ||  || |||||||| | |||||            ||||||||| ||||  |||||||||  || |||| ||    
T  45293239 tagcagggccgaggctaccaaattcactgctggtttatggctccaagctgg------------acccaagtccgcagccgaatggttgactggtcttaat 45293152  T
Q  301 gttcctcactaccttggcttcaaagcttgaaaattaaac 339  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  45293151 gttcctaattaccttggcttcaaagcttgaaaattaaac 45293113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 101 - 339
Target Start/End: Complemental strand, 45302299 - 45302073
Alignment:
Q  101 aacattatgaaaacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcat 200  Q
    |||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |||| |||    
T  45302299 aacattttgaaaacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccat 45302200  T
Q  201 tagcaggagcgaggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcatgatcttcat 300  Q
    |||||||  |||||||||||||| ||| ||  || |||||||| | |||||            ||||||||| ||||  |||||||||  || |||| ||    
T  45302199 tagcagggccgaggctaccaaattcactgctggtttatggctccaagctgg------------acccaagtccgcagccgaatggttgactggtcttaat 45302112  T
Q  301 gttcctcactaccttggcttcaaagcttgaaaattaaac 339  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  45302111 gttcctaattaccttggcttcaaagcttgaaaattaaac 45302073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 434 - 557
Target Start/End: Complemental strand, 45281758 - 45281635
Alignment:
Q  434 gagtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggggatccaccagaaatacaaacgaaaat 533  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||| |||| | ||||| ||||||||||||| ||||||    
T  45281758 gagtgtgaatgtgatgcatgggtcggagacaaattgttattctttgtaattatctttcgtatttttatacatgagatcccccagaaatacaaatgaaaat 45281659  T
Q  534 ttgctcgaatgaaagtataagctt 557  Q
    |||||||||| | ||| |||||||    
T  45281658 ttgctcgaattatagtttaagctt 45281635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 431 - 587
Target Start/End: Complemental strand, 45293101 - 45292942
Alignment:
Q  431 agagagtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggggatccaccagaaatacaaacgaa 530  Q
    ||||||||||||||||||||||||| |  | ||||||| |||||||||||||| | ||| ||| | ||| | |||| ||||||||||||||||||| |||    
T  45293101 agagagtgtgaatgtgatgcatggcacataaacaaattattattctttgtaattacctt-cctatatttttccaggagatccaccagaaatacaaatgaa 45293003  T
Q  531 aatttgctcgaatgaaagtataagcttc----ttcaattttcatttgatcattcaaatata 587  Q
    ||||||||||||| | ||| ||||||||    |||| ||||| ||||||||||||||||||    
T  45293002 aatttgctcgaattatagtttaagcttcaattttcatttttcttttgatcattcaaatata 45292942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 431 - 587
Target Start/End: Complemental strand, 45302061 - 45301902
Alignment:
Q  431 agagagtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggggatccaccagaaatacaaacgaa 530  Q
    ||||||||||||||||||||||||| |  | ||||||| |||||||||||||| | ||| ||| | ||| | |||| ||||||||||||||||||| |||    
T  45302061 agagagtgtgaatgtgatgcatggcacataaacaaattattattctttgtaattacctt-cctatatttttccaggagatccaccagaaatacaaatgaa 45301963  T
Q  531 aatttgctcgaatgaaagtataagcttc----ttcaattttcatttgatcattcaaatata 587  Q
    ||||||||||||| | ||| ||||||||    |||| ||||| ||||||||||||||||||    
T  45301962 aatttgctcgaattatagtttaagcttcaattttcatttttcttttgatcattcaaatata 45301902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 45273829 - 45273753
Alignment:
Q  9 agcaaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggccagaagaac 85  Q
    ||||||| | ||| ||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||| || |||||    
T  45273829 agcaaagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaac 45273753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 45282073 - 45281997
Alignment:
Q  9 agcaaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggccagaagaac 85  Q
    ||||||| | ||| ||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||| || |||||    
T  45282073 agcaaagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaac 45281997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 45293413 - 45293346
Alignment:
Q  9 agcaaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggc 76  Q
    ||||||| | ||| ||||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||    
T  45293413 agcaaagacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggc 45293346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 45302373 - 45302306
Alignment:
Q  9 agcaaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggc 76  Q
    ||||||| | ||| ||||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||    
T  45302373 agcaaagacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggc 45302306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 340 - 430
Target Start/End: Original strand, 13218205 - 13218295
Alignment:
Q  340 taatgtttctattcagtggccgtggttattggcataaaattattgaatccatcgtttgggctcataataaattaaaaggttctcctgctac 430  Q
    |||||||||||||||| || ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  13218205 taatgtttctattcagcgggcgtggttattggcaagaacttattgaatccatcgtttgggctcataataaattaaaagttgctcctgctac 13218295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 54180929 - 54180853
Alignment:
Q  340 taatgtttctattcagtggccgtggttattggcataaaattattgaatccatcgtttgggctcataataaattaaaa 416  Q
    |||||||||||||||| || ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||    
T  54180929 taatgtttctattcagcgggcgtggttattggcaagaacttattgaatccatcgtttgggctcataataaattaaaa 54180853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 340 - 430
Target Start/End: Complemental strand, 239504 - 239414
Alignment:
Q  340 taatgtttctattcagtggccgtggttattggcataaaattattgaatccatcgtttgggctcataataaattaaaaggttctcctgctac 430  Q
    |||||||| ||||||| |||||||||||||||||  || | |||||||| ||||||||||||||||| |||||||||| | ||||||||||    
T  239504 taatgtttttattcagcggccgtggttattggcaagaactcattgaatctatcgtttgggctcataacaaattaaaagttgctcctgctac 239414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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