View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_low_20 (Length: 300)
Name: NF11565_low_20
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 10468688 - 10468402
Alignment:
| Q |
1 |
ttaatattattgagatattggaagacaaacttgattataattttgcaattttaaaattatttttgtatatccataatttgattgagtagatagacccacc |
100 |
Q |
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| T |
10468688 |
ttaatattattgagctattgtaagtcaaatttgattataattttgcaattttaaaattatttttgtatatccataatttgatcgagtaaatagacccacc |
10468589 |
T |
|
| Q |
101 |
atttcaatgataatttggatatttacaaaaagttaaaaatttatatttttgggtttgtaatacgttagtcagaaattgaaaatgggtttatttgaagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
10468588 |
atttcaatgataatttggatatttacaaaaagttcaaaatttatatttttgggtttgtaatacattagtcagaaattgaaaatgggtttatttcaagaaa |
10468489 |
T |
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| Q |
201 |
aaggaagaagtaggataactttttagggaccattgtgattgtgtgtatgatttgttcacttgttaaatttgtgtacatgttctgtct |
287 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10468488 |
aaggaagaagtaggatagctttttagggaccattgtgattgtgtgtatgatttgttcacttgttaaatttgtgtacatgttttgtct |
10468402 |
T |
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