View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11565_low_22 (Length: 288)

Name: NF11565_low_22
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11565_low_22
NF11565_low_22
[»] chr1 (1 HSPs)
chr1 (1-288)||(12387993-12388280)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 12387993 - 12388280
Alignment:
Q  1 taggcaatcgtgacagattaactataccaaaatcctttcattccaaataagtcgttttcgtaagttctctcaaaaaataccacataagtaattatataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12387993 taggcaatcgtgacagattaactataccaaaatcctttcattccaaataagtcgttttcgtaagttctctcaaaaaataccacataagtaattatataaa 12388092  T
Q  101 caaagagaaaaactcaaataagtcaatctaaacaacggtaattttatctatttaatattcttctaaccatttggtaagattatgattacctaaaatgagg 200  Q
    |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12388093 caaacagataaactcaaataagtcaatctaaacaacagtaattttatctatttaatattcttctaaccatttggtaagattatgattacctaaaatgagg 12388192  T
Q  201 agggtattgtggccattggttgctgagagtcctaagctccaagtcatctggctcatgagaagaatggatttgtgttgaattctcaaca 288  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||    
T  12388193 agggtattgtggccattggttggtgagagtcctaagctccaagtcatctggctcatgagaagaagggatttgtggggaattctcaaca 12388280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University