View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_low_23 (Length: 275)
Name: NF11565_low_23
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 23437297 - 23437546
Alignment:
| Q |
18 |
aattttagttacttggtttaggtttaagtcctgatgccaaacgtacaacttcatctactgcgttatcatagccggttttgtaaattaatggagcatcatc |
117 |
Q |
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| T |
23437297 |
aattttagttacttggtttaggtttaagtcctgatgccaaacgtacaacttcatctactgcgttatcatagccggttttgtaaattaatggagcatcatc |
23437396 |
T |
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| Q |
118 |
cttaagctttttgatttcagcattcaacttgtcaactactttcttgtgagcatcttcttttatttgtaatttcataaagtcatcccgtgaagttttcttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |
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| T |
23437397 |
cttaagctttttgatttcagcattcaacttgtcaactactttcttgtgagcatcttcttttatttgtattttcagaatgtcatcccgtgaagttttcttc |
23437496 |
T |
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| Q |
218 |
aatttgttcaattcatcttcaagagtcgtcatctcagccatcttcttctc |
267 |
Q |
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| T |
23437497 |
aatttgttcaattcatcttcaagagtcgtcatctcagccatcttcttctc |
23437546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 23432849 - 23432909
Alignment:
| Q |
207 |
aagttttcttcaatttgttcaattcatcttcaagagtcgtcatctcagccatcttcttctc |
267 |
Q |
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| T |
23432849 |
aagttttcttcaatttgttcagttcatctttcagactagtcatctctgccatattcttctc |
23432909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 23447309 - 23447249
Alignment:
| Q |
207 |
aagttttcttcaatttgttcaattcatcttcaagagtcgtcatctcagccatcttcttctc |
267 |
Q |
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||||||||||||||||||||| |||||||| ||| | ||||||||| |||| |||||||| |
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| T |
23447309 |
aagttttcttcaatttgttcagttcatctttcagactagtcatctcaaccatattcttctc |
23447249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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