View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11565_low_27 (Length: 255)
Name: NF11565_low_27
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 25601070 - 25601298
Alignment:
| Q |
12 |
atagggcttaagttacaaaacaatcaatcatcaacgatatacaaagttgaaaaaatagctttcattcaattttgtaatgtgaggatagagtcatattgat |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25601070 |
atagggcttaagttataaaacaatcaatcaacaatgatatacaaagttgaaaaaatagctttcattcaattttgtaatgtgaggatagagtcatattgat |
25601169 |
T |
|
| Q |
112 |
gatcattttatattgagatgtttgatgataatttgttgaatacattagagatatgtaagagatttcttcattaaaaacaattgacaagaagggatttcat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25601170 |
gatcattttatattgagatgtttgatgataatttgttgaatacattagagatatgtaagatatttcttcattaaaaaaaattgacaagaagggatttcat |
25601269 |
T |
|
| Q |
212 |
tatttagagaaggttgttagttttgtttg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25601270 |
tatttagagaaggttgttagttttgtttg |
25601298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University