View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11565_low_28 (Length: 250)
Name: NF11565_low_28
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_28 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 5232985 - 5232747
Alignment:
| Q |
12 |
aagaaactaaattgagctgctggaaattgttatccaaacgagattcaaatcatgaatccgagtacacnnnnnnngaatcgtgaatcgaatcttattataa |
111 |
Q |
| |
|
||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | ||||||| ||||||||||| | |
|
|
| T |
5232985 |
aagaagctacattgagctgctggaaatcattatccaaacgagattcaaatcatgaatccgagtacactttttctgactggtgaatctaatcttattatga |
5232886 |
T |
|
| Q |
112 |
attgtaagatatattgtcaataaaaatgttattctaagttgaaaaagcaagtgacataacaaaattataaaccgatatatcgtatatgaaccatnnnnnn |
211 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5232885 |
atcgtaagatatattgtcaataaaaatgttattctaagttgaaaaagcaagtgacataacaaaattataaaccgatatatcgtatatgaaccataaaaaa |
5232786 |
T |
|
| Q |
212 |
nttcaaatttaggtcatctaccaaatgacctaaagaaaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5232785 |
attcaaatttaggtcatctaccaaatgacctaaagaaaa |
5232747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 9836958 - 9837009
Alignment:
| Q |
87 |
aatcgtgaatcgaatcttattataaattgtaagatatattgtcaataaaaat |
138 |
Q |
| |
|
||||| ||||| ||||||||||||||| | |||| ||||||||||||||||| |
|
|
| T |
9836958 |
aatcgagaatcaaatcttattataaatcgcaagaaatattgtcaataaaaat |
9837009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 26576438 - 26576476
Alignment:
| Q |
101 |
tcttattataaattgtaagatatattgtcaataaaaatg |
139 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
26576438 |
tcttattatgaattgtaagatacattgtcaataaaaatg |
26576476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 7057683 - 7057646
Alignment:
| Q |
87 |
aatcgtgaatcgaatcttattataaattgtaagatata |
124 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
7057683 |
aatcatgaatcgaatcttattataaattgtaatatata |
7057646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 5912833 - 5912781
Alignment:
| Q |
86 |
gaatcgtgaatcgaatcttattataaattgtaagatatattgtcaataaaaat |
138 |
Q |
| |
|
||||||||||||||| |||| || |||||||||||| |||| |||||||||| |
|
|
| T |
5912833 |
gaatcgtgaatcgaaacttagcatcaattgtaagatacattgccaataaaaat |
5912781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 19454240 - 19454188
Alignment:
| Q |
86 |
gaatcgtgaatcgaatcttattataaattgtaagatatattgtcaataaaaat |
138 |
Q |
| |
|
||||||||||| |||||||| ||| |||||||||||| |||| || ||||||| |
|
|
| T |
19454240 |
gaatcgtgaattgaatcttactatgaattgtaagatacattgccattaaaaat |
19454188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 35578235 - 35578271
Alignment:
| Q |
86 |
gaatcgtgaatcgaatcttattataaattgtaagata |
122 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
35578235 |
gaattgtgaatcgaatcttattataaatcgtaagata |
35578271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 38340363 - 38340403
Alignment:
| Q |
90 |
cgtgaatcgaatcttattataaattgtaagatatattgtca |
130 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
38340363 |
cgtgaatcgaatcttattatgaagtgtaagatacattgtca |
38340403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University