View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_low_3 (Length: 623)
Name: NF11565_low_3
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 73 - 610
Target Start/End: Complemental strand, 50558918 - 50558381
Alignment:
| Q |
73 |
gattcaatggttttacactcatcttgcttactcctaaagcagaatttcaataatcgtcttttctcggtgtttttgtgtagataccatgctattcataagg |
172 |
Q |
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| T |
50558918 |
gattcaatggttttacactcatcttgcttactcctaaagcagaatttcaataatcgtcttttctcggtttttttgtgtagataccatgctattcataagg |
50558819 |
T |
|
| Q |
173 |
aggtctatgattggtttgatataagttttgataaatttgggcgaacctcttctcctgagcaaactgaaatttgccagtcaattttccaaaagatatttga |
272 |
Q |
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| T |
50558818 |
aggtctacgattggtttgatataagttttgataaatttgggcgaacctcttctcctgagcaaactgaaatttgccagtcaattttccaaaagatatttga |
50558719 |
T |
|
| Q |
273 |
taacaaatggatctccgagagaacaatggagcaggtgttcaattttctatttatttgacattgttcctctctcttgtttagttgaaaatttcagaaaggt |
372 |
Q |
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| T |
50558718 |
taacaaatggatctccgagagaacaatggagcaggtgttcaattttctatttatttgacattgttcctctctcttgtttagttgaaaatttcagaaaggt |
50558619 |
T |
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| Q |
373 |
tctttattacgctttactaaaatgcttatcaaatttcagctttactgcaatacatgcgagaggttcttgtgtgatcggcttgtggaaggtgcctgtccaa |
472 |
Q |
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| T |
50558618 |
tctttattacactttactaaaatgcttatcaaatttcagctttactgcgatacctgcgagaggttcttgtgtgatcggcttgtggaaggtacctgtccaa |
50558519 |
T |
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| Q |
473 |
ctcctgggtgtgagtatggttctgcacgaggtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgcaaggtagc |
572 |
Q |
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| T |
50558518 |
ctcctgagtgtgagtatggttctgcacgaggtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgcaaggtagc |
50558419 |
T |
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| Q |
573 |
aaccctctccctaaatttttgctctatgtttctgtgct |
610 |
Q |
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| T |
50558418 |
aaccctctccctaaatttttgctctatgtttctgtgct |
50558381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 150 - 263
Target Start/End: Complemental strand, 29773538 - 29773425
Alignment:
| Q |
150 |
tagataccatgctattcataaggaggtctatgattggtttgatataagttttgataaatttgggcgaacctcttctcctgagcaaactgaaatttgccag |
249 |
Q |
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| T |
29773538 |
tagataccatgctattcacaaggaagtctacgattggttcaatataagctttgatgaatttggacgtacttcttcccctgagcaaactgaagtgtgccaa |
29773439 |
T |
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| Q |
250 |
tcaattttccaaaa |
263 |
Q |
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| T |
29773438 |
gcaattttcaaaaa |
29773425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 403 - 571
Target Start/End: Complemental strand, 29773236 - 29773068
Alignment:
| Q |
403 |
aaatttcagctttactgcaatacatgcgagaggttcttgtgtgatcggcttgtggaaggtgcctgtccaactcctgggtgtgagtatggttctgcacgag |
502 |
Q |
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| T |
29773236 |
aaatttcagctttactgcgatacatgcaaaaggttcttagccgatcgacttgtggagggtacctgcccaattccagggtgtgagtatgattctgccagag |
29773137 |
T |
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| Q |
503 |
gtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgcaaggtag |
571 |
Q |
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| T |
29773136 |
gggatcagtgtgagaactgtggcaaccttctaaatccgacagaattgaagattcccaagtgcaaggtag |
29773068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 50569065 - 50568978
Alignment:
| Q |
228 |
tgagcaaactgaaatttgccagtcaattttccaaaagata--tttgataacaaatggatctccgagagaacaatggagcaggtgttca |
313 |
Q |
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| T |
50569065 |
tgagctaactgaagtttgcaaggaaattttcaaaaagataaatttgataacaaatggctatccgagagaaccgtggagcaggtgttca |
50568978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 50569104 - 50569071
Alignment:
| Q |
143 |
ttttgtgtagataccatgctattcataaggaggt |
176 |
Q |
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| T |
50569104 |
ttttgtgtagataccatgctattaataaggaggt |
50569071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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