View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_low_31 (Length: 248)
Name: NF11565_low_31
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 41219568 - 41219788
Alignment:
| Q |
11 |
aaggtaacaagtattggtactaattaattttgcaacggatacaagattaactctaaaatcaggaatatacagaacattatgcagaatgagcgttggtgta |
110 |
Q |
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| T |
41219568 |
aaggtaacaattattggtactaattaattttgcaacggatacaagattaactctaaaatcaggaatatacagaacattatgcagaatgagcgttggtgta |
41219667 |
T |
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| Q |
111 |
agttgcacagtgcctgaaacagaagcaaaaattctattgccatttggcagtgacacaagaataggtttaattggtttgaaactagtaaatgattggaaat |
210 |
Q |
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| T |
41219668 |
agttgcacagtgcctgaaacagaagcaaaaattctattgccatttggcagtgacacaagaataggtttaattggtttgaaactagtaaatgattggaaat |
41219767 |
T |
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| Q |
211 |
cgaaggaaatgtgatcagttg |
231 |
Q |
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||||||||||||||||||||| |
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| T |
41219768 |
cgaaggaaatgtgatcagttg |
41219788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 21320236 - 21320016
Alignment:
| Q |
11 |
aaggtaacaagtattggtactaattaattttgcaacggatacaagattaactctaaaatcaggaatatacagaacattatgcagaatgagcgttggtgta |
110 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
21320236 |
aaggtaacaattattggtaccgattaattttgcaacggatacaagattaacactaaaatcaggaatatacaaaacattgtgcagaatgagcgttggtgta |
21320137 |
T |
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| Q |
111 |
agttgcacagtgcctgaaacagaagcaaaaattctattgccatttggcagtgacacaagaataggtttaattggtttgaaactagtaaatgattggaaat |
210 |
Q |
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|||||||||||| |||||| ||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
21320136 |
agttgcacagtgactgaaatagaagaaaaaattctattgccattgggcagtgacacaacaataggtttaattggtttgaaattagtaaatgattggaaat |
21320037 |
T |
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| Q |
211 |
cgaaggaaatgtgatcagttg |
231 |
Q |
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||||||||||||||||||||| |
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| T |
21320036 |
cgaaggaaatgtgatcagttg |
21320016 |
T |
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